Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03548 ATGGGCGAGGAAGAGAAAAAACCAGAGGAAAGCAAAGTGGAGGACAAAAAAGCAGAGGAACCCAAGGAAGAGAAGAAACCGGAGGAAGACAATAAAGCAGAGGACTCAAAAGATGAAAAGGAATCCAAGGTGGAGGAATCTGCGCCGCCGCCAGAGATCGTGCTTAGAGTCTTCATGCATTGCGAGGGTTGTGCTCGCAAGGTTCGTCGCTCCCTCAAAGGATTCCCAGGGGTGGAAGATGTTCTCACGGATTGCAAGTCTCACAAGGTGGTGGTGAAAGGCGAAAAGGCGGATCCGCTGAAGGTTCTAGAAAGAGTACAGAGGAAGAGTCATAGAAAGGTTGAACTTCTCTCTCCGATCCCAAAACCCCCAGAAGAAGAGAAAAAGCCCGAAGAGGAAGAGAAACCCAAACCAGAGGAGAAGAAAGAAGAGCCTCAGGTTATTACAGTCGTTCTGAAAGTCCACATGCATTGCGAAGCTTGTGCACAGGAAATCAAGAGACGCATCGAGAAAATGAAAGGGGTGGAATCAGTGGGAGCAGATCTGAAGAGTTCAGAGGTGAGCGTGAAGGGGGTGTTCGAGGCAGAGAAGTTGGTGGAGCACGTGTCGAAGAGGACAGGGAAGCATGCAGTGATAGTGAAGCAAGAGGCAGAGAAGAAGGAGGGGGAAGCAAAAGAAGAGAGCAAAGGGGAGAAGAAAGCAGAGGAAGGGGAGAAGAAGGAGAAAGAGGGTGGTGAGGGAGAGGAAAAGAAGGAGAAGAAAGAAGGAGAGGGTGAAGGGAAAGGAGAAGAGGGAGGCACAGAAGAAAGCTCAGTGGTGGAGCTGAAAAGAAGTGAGTATTATTACAACCCTCCAAGGTATGGAATGGAGTTCTATGCATACCCTGGACCAAATTACCCTCCCCAGATCTTCAGTGATGAGAACCCCAATGCCTGTTCTGTCATGTAA 948 0.4926 MGEEEKKPEESKVEDKKAEEPKEEKKPEEDNKAEDSKDEKESKVEESAPPPEIVLRVFMHCEGCARKVRRSLKGFPGVEDVLTDCKSHKVVVKGEKADPLKVLERVQRKSHRKVELLSPIPKPPEEEKKPEEEEKPKPEEKKEEPQVITVVLKVHMHCEACAQEIKRRIEKMKGVESVGADLKSSEVSVKGVFEAEKLVEHVSKRTGKHAVIVKQEAEKKEGEAKEESKGEKKAEEGEKKEKEGGEGEEKKEKKEGEGEGKGEEGGTEESSVVELKRSEYYYNPPRYGMEFYAYPGPNYPPQIFSDENPNACSVM* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03548 315 MobiDBLite consensus disorder prediction 1 47 - -
Lapu3g03548 315 MobiDBLite consensus disorder prediction 1 52 - -
Lapu3g03548 315 SUPERFAMILY HMA, heavy metal-associated domain 55 109 IPR036163 GO:0046872
Lapu3g03548 315 CDD HMA 59 115 IPR006121 GO:0046872
Lapu3g03548 315 Pfam Heavy-metal-associated domain 54 109 IPR006121 GO:0046872
Lapu3g03548 315 Pfam Heavy-metal-associated domain 152 209 IPR006121 GO:0046872
Lapu3g03548 315 ProSiteProfiles Heavy-metal-associated domain profile. 147 211 IPR006121 GO:0046872
Lapu3g03548 315 MobiDBLite consensus disorder prediction 111 145 - -
Lapu3g03548 315 Gene3D - 50 122 - -
Lapu3g03548 315 SUPERFAMILY HMA, heavy metal-associated domain 145 215 IPR036163 GO:0046872
Lapu3g03548 315 ProSiteProfiles Heavy-metal-associated domain profile. 50 114 IPR006121 GO:0046872
Lapu3g03548 315 CDD HMA 151 210 IPR006121 GO:0046872
Lapu3g03548 315 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 35 315 IPR044577 GO:0046872
Lapu3g03548 315 Gene3D - 144 213 - -
Lapu3g03548 315 MobiDBLite consensus disorder prediction 213 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03548 Lapu-Chr3 58938833 58940895 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03548 - - gmx:100796289 335.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03548 3 58938833 58940895 Lapu3g03548 3 58938833 58940895 ECH
Lapu3g03548 3 58938833 58940895 Lapu9g00976 9 15279563 15281923 PCT