Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03509 ATGGGACTCCAACCCAACCCATCGGAACACCACCAACACGGCATTTTCAATACCAGGCAAGAACACGAAGAGACATTGCTGGCTCTCGTCCAACACCGTACCCGTGAAGTAAAAAGGCTCCGTTATTATATCTCTTATTACAACTCCCAGCTTGAGGAAGCCGAGAAGAGGTTGCAAGAATCTAAATCAAAATGGGCTCGTTTACGAGGTCAAACTACTGCAAGTTCATCAAATATCGACACTGAACATGTGAGGATAGAACGTGAATCAAAGAATGGTTCCTTTCATAAAAGTGACGGTTTTTCCAAAAACCACCTTCGATCTAAGTTACACCTTGCTCATGTGGGTTCAAAATTTTCGCGTACCGCACCGTTGCCACCTTTTTCTTCTACTAAGTTAATGGTAAAGTCTGATAAGACTCAGAGAATCTCTACTGAACAGGAAAGCGTTGAAGTCAAAGGCAGAGGGAGCAAAAGGAAGTTTTTTGAACAGAAAGAAGCTGATGAATTGGGTCCCTTGATATATAAGAGTTCTGCACCAGAATCAGTGCTCTATCAAACAAGCAATCACTTCTCAAGTCTACACAAGAGGAGAGTACGATGTATTGCGGTGTGTCCTGTAAATGATCACCACTTTGTGACCAGTGCTTTGGATGGAGTGGTCAACTTGTGGGAAGTTCATTCATCAGGATCAGGAGCTTCTCTTCTTAGAACTACAAATTGTATATCCCCGCAGCAGAGATGGCCAGAAGATGTAGTTTGGCACCCAGAGGGGAACGGCTTGCTTTCGGTATACAGTGCTGATGGTCAAGACTCTCAAATATCAGTTACGGACTTCAGTAGAGTGAAAGGTGGAGGGAGGGCATATGTGAATTTCTTAGAGGACAAACCTCACGCGAAGGGTGTTATAAATAGCATTGCTTTTCTGCCTCGGGAGAATACCAGTTTTGTAACCGGAGGAACTGACCATGCTGTCGTATTATGGCGTGAGAACGGTCAGAACAAATGGAAGCCAGAAGCATTACACAGGGATCTTCATTCTTCAGCCGTCATGGGAGTATCTGGTATGCAGCAGAGGGAACTTGTGTTGTCTGTGGGCAAAGACAAGAGAATTGTGGGGTACGATGCACATGTAGGAAGAAAAGACTTCATGCAGCAAGTTGATAGTAAATGTTTGAGTGTTCTGCCAAATCCGCGTGACTTCAATTTATTCATGGTTCAAACGGGGACTCCTGAGAGGCAGCTTCGATTATTTGATATCAGATCAAAACGGACAGAAGTTCATGGTTTTGGATGGAAGCAAGAAAGCAGTGAGTCTCAGTCAGCTCTGATAAATCAGGCTTGGTCTCCGAATGGAGTGTACATAACATCTGGTTCAGCCGATCCCATGATTCACATATTTGACATAAGATATAATGCTCACAAGCCCTCCCAATCTATCCAAGCTCATCAGAGACGAGTCTTCAGAGCCATCTGGCTTCGCTCTCTTCCCTTGCTCATTTCCATATCATCCGATCTCAACATTGGCTTACACAAAATTCTACTATAA 1548 0.4399 MGLQPNPSEHHQHGIFNTRQEHEETLLALVQHRTREVKRLRYYISYYNSQLEEAEKRLQESKSKWARLRGQTTASSSNIDTEHVRIERESKNGSFHKSDGFSKNHLRSKLHLAHVGSKFSRTAPLPPFSSTKLMVKSDKTQRISTEQESVEVKGRGSKRKFFEQKEADELGPLIYKSSAPESVLYQTSNHFSSLHKRRVRCIAVCPVNDHHFVTSALDGVVNLWEVHSSGSGASLLRTTNCISPQQRWPEDVVWHPEGNGLLSVYSADGQDSQISVTDFSRVKGGGRAYVNFLEDKPHAKGVINSIAFLPRENTSFVTGGTDHAVVLWRENGQNKWKPEALHRDLHSSAVMGVSGMQQRELVLSVGKDKRIVGYDAHVGRKDFMQQVDSKCLSVLPNPRDFNLFMVQTGTPERQLRLFDIRSKRTEVHGFGWKQESSESQSALINQAWSPNGVYITSGSADPMIHIFDIRYNAHKPSQSIQAHQRRVFRAIWLRSLPLLISISSDLNIGLHKILL* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03509 515 Coils Coil 44 71 - -
Lapu3g03509 515 SMART WD40_4 286 329 IPR001680 GO:0005515
Lapu3g03509 515 SMART WD40_4 186 225 IPR001680 GO:0005515
Lapu3g03509 515 SMART WD40_4 335 375 IPR001680 GO:0005515
Lapu3g03509 515 SMART WD40_4 473 512 IPR001680 GO:0005515
Lapu3g03509 515 SMART WD40_4 431 468 IPR001680 GO:0005515
Lapu3g03509 515 SUPERFAMILY WD40 repeat-like 192 510 IPR036322 GO:0005515
Lapu3g03509 515 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 15 513 - -
Lapu3g03509 515 Gene3D - 174 420 IPR015943 GO:0005515
Lapu3g03509 515 Gene3D - 438 513 IPR015943 GO:0005515
Lapu3g03509 515 Pfam WD domain, G-beta repeat 445 468 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03509 Lapu-Chr3 58435190 58438560 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03509 - - ccaj:109813667 698.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03509 3 58435190 58438560 Lapu9g00915 9 13740905 13746496 PCT