Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03338 ATGGCGAACACTCTACATAACGGTGCCAAATGCAGAATCCCTTTAAGGAACCAATCCTTGCCCTTCTCTCGCCACGTTTCCAGATCCCTCTCTTTCCTTCCCAAAACACGCGCGGGAAAACAATCAAACACCTTCGCGGTGAAGGCTTCGCACGCTGACTACCCCGTTGACCCTTCGATCAGTCCACGTGTCAATGCCGTCAAGCCTTCCAAAACCGTCGCCATCAGCGACCTCGCCACCTCCCTCGTCCAAGCCGGCGTTCCCGTCATTCGCCTCGCCGCCGGCGAGCCTGATTTCGACACGCCCGCTCCCATCGCCGAGGCTGGGATTAATGCAATTCGCGAAGGTTACACAAGGTACACGCCCAATGCCGGAACCATGGAACTGCGTCAAGCGATTTGTCGTAAGCTAAAAGAGGAGAACGGGATTACTTATACTCCTGATCAGGTTGTGGTTAGTAACGGAGCCAAACAGAGTCTTGCTCAGGCAGTGCTTGCAGTTTGCTCCCCTGGAGATGAGGTCATTATTCCAGCTCCATTCTGGGTTAGTTACCCAGAAATGGCACGGTTGGCTGATGCAACACCTGTGATTCTTCCAACATCAATATCTGATAATTTCCTTTTAGATCCCAAACTTCTTGAATCCAAAATAACTGAAAGATCGAGACTGCTTATTCTTTGTTCACCATCTAATCCAACAGGATCTGTCTACCCTAAGGAATTACTTGAAAAGATAGCCCAGATTGTTGCAAAGCACCCAAGGCTTCTGGTTCTCTCTGATGAAATTTATGAACACATAATTTATGCACCAGCAACTCACACAAGCTTTGCATCTTTACCAGGAATGTGGGACAGAACTCTAACTGTAAATGGATTTTCTAAGGCCTTTGCAATGACGGGTTGGCGGCTTGGATATATTGCTGGTCCAAAACATTTTGTTGCCGCATGTGGAAAGATCCAAAGTCAGTTCACTTCAGGAGCCAGTAGTATTGCCCAGAAAGCTGCAGTTGCTGCATTAGGACTGGGTTATGCTGGTGGAGAGGCAGTTTCTACCATGGTTAAAGCATTTAGAGAGCGAAGGGATTTCTTAGTAAAAAGTTTTAGAGAAATAGATGGTGTCAAGATATCCGAACCCAAGGGAGCATTTTATCTGTTCATTGATTTCAGCTTCTATTATGGAAGAGAAGCTGAAGGATTTGGTAAAATTGAGGATTCTGAGTCCCTCTGTCGATACCTATTGGATGTGGGCCAGGTAGCCTTGGTTCCAGGGAGTGCGTTTGGAGATGATACTTGCATTCGCATCTCTTATGCAGAATCCCTCACCACCCTACAGGCAGCTGTAGAAAGAATTAAAAAAGCACTCCTCCCTCTAACCTCTGCTGCACTTGTTTAA 1392 0.4705 MANTLHNGAKCRIPLRNQSLPFSRHVSRSLSFLPKTRAGKQSNTFAVKASHADYPVDPSISPRVNAVKPSKTVAISDLATSLVQAGVPVIRLAAGEPDFDTPAPIAEAGINAIREGYTRYTPNAGTMELRQAICRKLKEENGITYTPDQVVVSNGAKQSLAQAVLAVCSPGDEVIIPAPFWVSYPEMARLADATPVILPTSISDNFLLDPKLLESKITERSRLLILCSPSNPTGSVYPKELLEKIAQIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWDRTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACGKIQSQFTSGASSIAQKAAVAALGLGYAGGEAVSTMVKAFRERRDFLVKSFREIDGVKISEPKGAFYLFIDFSFYYGREAEGFGKIEDSESLCRYLLDVGQVALVPGSAFGDDTCIRISYAESLTTLQAAVERIKKALLPLTSAALV* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03338 463 Gene3D Aspartate Aminotransferase, domain 1 73 448 IPR015422 GO:0003824
Lapu3g03338 463 Pfam Aminotransferase class I and II 88 450 IPR004839 GO:0009058|GO:0030170
Lapu3g03338 463 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 291 304 IPR004838 GO:0003824|GO:0009058|GO:0030170
Lapu3g03338 463 CDD AAT_like 90 452 - -
Lapu3g03338 463 Gene3D - 119 341 IPR015421 GO:0003824
Lapu3g03338 463 FunFam Aspartate aminotransferase 119 341 - -
Lapu3g03338 463 PANTHER ASPARTATE AMINOTRANSFERASE 59 456 - -
Lapu3g03338 463 SUPERFAMILY PLP-dependent transferases 60 454 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03338 Lapu-Chr3 56678793 56682882 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03338 K15849 - gmx:100776446 840.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03338 3 56678793 56682882 Lapu3g03338 3 56678793 56682882 ECH
Lapu3g03338 3 56678793 56682882 Lapu6g00176 6 1471400 1474414 PCT