Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02922 ATGGCGGTGGAGTACACATGCTGCACATCGGAGTTCTTCATTCACATAGTCCTGATCGTGTTGCTGGTGTTGTTCGCTGGCCTCATGTCGGGCCTCACGTTGGGCCTCATGTCCCTCAGCCTTGTTGATCTCGAGGTCCTCGCGAAGTCTGGTACTCCTCAAGATCGTAAGCACGCTGCGAAGATATTACCAGTTGTCAAAAACCAACATTTATTGCTTTGTACTCTGCTAATTTGCAATGCTGCAGCCATGGAGGCACTTCCTATTTTTCTTGATAGTCTTGTTACTGCGTGGGGTGCTATCCTTATTTCGGTGACACTAATTCTTTTGTTCGGCGAGATCATTCCCCAATCAGTTTGTTCTCGGTATGGTTTGGCTATTGGTGCATCAGTGGCTCCCTTTGTCCGTGTGCTTGTATGTGTATGCTTTCCAGTTGCATTTCCAATTAGTAAGTTGTTGGACTTTTTGCTAGGCCACCGACATGAAGCCTTATTCCGTAGAGCTGAGTTGAAGACACTTGTAAATTTGCATGGTAATGAGGCTGGAAAAGGTGGGGAACTGACGCATGATGAAACAACTATCATTGCTGGGGCACTTGAACTCAGCGAGAAGACAGCTAGTGATGCCATGACCCTTATAGCTGAAACATTTGCTGTTGATATTAATTCAAAGCTTGATAGGGAACTGATGAATGAAATATTGGAGAAAGGGCATAGCAGAGTCCCAGTCTTCTATGAGCAGCCTACAAACATTATAGGACTTATACTGGTGAAGAATTTATTGACTGTTCATCCAGAAGATGAAGCATCCGTGAAGAGTGTAACTATACGCAGGATTCCAAGGGTTCCAGAAAGTATGCCACTCTATGACATTTTAAATGAATTCCAGAAGGGCCATAGCCACATGGCAGTTGTTGTGAGACGGTGTGACAAGATGAAGCAACAATCTTCCCAAAATAATGCAAACGACTCGGTGAGAGATGTGAAGGTGGATATTGATGGTGAGAAGCCTCCCAAAGAGAAAATTTTGAAACCCAAGGTACCACTCCATAAGTGGAAAAGCTTCCCAAATACAAACATGTCAAATAGGGGTGGTTCTCGGAGCAGAAAATGGTCAAAAAATATGTATTCGGATATTTTGGAGATAGATGGAAGTCCCCTTCCTAAGCTCCCTGAAGAAGAAGAAGCTGTTGGAATTATCACAATGGAAGATGTCATTGAAGAGCTACTACAGGAGGAGATCTTTGATGAGACAGACCATCATTTTGAAGACTCGTGA 1278 0.4382 MAVEYTCCTSEFFIHIVLIVLLVLFAGLMSGLTLGLMSLSLVDLEVLAKSGTPQDRKHAAKILPVVKNQHLLLCTLLICNAAAMEALPIFLDSLVTAWGAILISVTLILLFGEIIPQSVCSRYGLAIGASVAPFVRVLVCVCFPVAFPISKLLDFLLGHRHEALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELSEKTASDAMTLIAETFAVDINSKLDRELMNEILEKGHSRVPVFYEQPTNIIGLILVKNLLTVHPEDEASVKSVTIRRIPRVPESMPLYDILNEFQKGHSHMAVVVRRCDKMKQQSSQNNANDSVRDVKVDIDGEKPPKEKILKPKVPLHKWKSFPNTNMSNRGGSRSRKWSKNMYSDILEIDGSPLPKLPEEEEAVGIITMEDVIEELLQEEIFDETDHHFEDS* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02922 425 ProSiteProfiles CNNM transmembrane domain profile. 8 191 IPR002550 -
Lapu3g02922 425 Pfam Cyclin M transmembrane N-terminal domain 18 190 IPR002550 -
Lapu3g02922 425 PANTHER METAL TRANSPORTER CNNM 3 422 IPR045095 GO:0010960
Lapu3g02922 425 SUPERFAMILY CBS-domain pair 194 411 IPR046342 -
Lapu3g02922 425 Gene3D - 191 325 IPR046342 -
Lapu3g02922 425 CDD CBS_pair_CorC_HlyC_assoc 205 306 IPR044751 -
Lapu3g02922 425 Gene3D - 381 417 IPR046342 -
Lapu3g02922 425 FunFam DUF21 domain-containing protein 189 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02922 Lapu-Chr3 52281765 52287908 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02922 K16302 - gmx:100801937 764.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02922 3 52281765 52287908 Lapu3g02922 3 52281765 52287908 ECH
Lapu3g02922 3 52281765 52287908 Lapu6g01145 6 11388399 11392301 PCT