Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01624 ATGAGTGCCGTTCATTTCAACGCATGGCTACACCCCAGCTTCACCAGATCCAGATCCCCAACTTTTCTATTTCACGGCCTCACTAACCTCCCCATTCCCTCCCTCACCGTAACCAAACGTCCTAGAGATAAGCCTTATTCATCGCCGTCTTTCCTGGTCTCCGCAGTGCTCACCAAAGAAGAGACGGTTGAGACGGAAGAGAAACCCGCGTTCAACTTCAAGTCCTACATGGTCCAGAAAGCCAACGCAGTCAACCAGGCGCTCGACGACGCCGTTCCGCTCCGCGAGCCGCTGCGGATCCACGAGGCCATGCGCTACTCCCTCCTCGCCGGAGGTAAACGCGTCCGCCCCGTCCTCTGCGTAGCCGCCTGCGAGCTCGTTGGCGGCTCCGCCGCCACGGCGATGCCCGCCGCCTGCGCCGTCGAGATGATCCACACCATGTCCCTCATCCACGACGACCTCCCCTGCATGGACAACGACGACCTCCGCCGCGGTAAGCCTACCAACCACAAGGTCTTTGGCGAGGACGTGGCAGTCCTCGCTGGCGACGCGCTCCTCGCATTCGCCTTCGAGCACATCGCCGGCGCCACTACCGGTGCCTCCCCGCCGCGCATCGTTCGCGCCCTTGGTGAGCTCGCGCGCGCCATCGGCGCCGAGGGACTCGTCGCCGGCCAGGTGGTCGACATCAAATCCGAGGGGCTCGACGACGTTGGCCTCGAACGGCTGGAGTTCATCCATCTCCACAAGACCGCGGCGCTGCTGGAGGGTGCGGTGGTCCTCGGTGCCATCCTCGGCGGGGGAACCGACGATGAGATTGAGAAATTGAGGAAGTTCGCGCGGTATATAGGATTGTTGTTTCAGGTGGTTGATGACATTCTGGATGTTACGAAGTCTTCCCAGGAATTGGGGAAAACTGCGGGGAAGGATCTTGCGGCTGATAAGGTTACTTATCCCAAGCTTTTGGGGATTGAGAAGTCTAAGGAGTTTGCTGCCAAATTGAACAAAGATGCTCAGGATCAGCTTTCTGGCTTTGACCCTGTCAAGGCTGCTCCTTTAGTTGCTTTAGCCAATTACATTGCTTATAGGCAAAATTAG 1095 0.5863 MSAVHFNAWLHPSFTRSRSPTFLFHGLTNLPIPSLTVTKRPRDKPYSSPSFLVSAVLTKEETVETEEKPAFNFKSYMVQKANAVNQALDDAVPLREPLRIHEAMRYSLLAGGKRVRPVLCVAACELVGGSAATAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHIAGATTGASPPRIVRALGELARAIGAEGLVAGQVVDIKSEGLDDVGLERLEFIHLHKTAALLEGAVVLGAILGGGTDDEIEKLRKFARYIGLLFQVVDDILDVTKSSQELGKTAGKDLAADKVTYPKLLGIEKSKEFAAKLNKDAQDQLSGFDPVKAAPLVALANYIAYRQN* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01624 364 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 54 364 - -
Lapu3g01624 364 SUPERFAMILY Terpenoid synthases 73 344 IPR008949 -
Lapu3g01624 364 SFLD Isoprenoid Synthase Type I 76 362 - -
Lapu3g01624 364 Gene3D Farnesyl Diphosphate Synthase 65 364 IPR008949 -
Lapu3g01624 364 ProSitePatterns Polyprenyl synthases signature 2. 282 294 IPR033749 -
Lapu3g01624 364 SFLD Polyprenyl Transferase Like 76 362 - -
Lapu3g01624 364 CDD Trans_IPPS_HT 96 362 IPR000092 GO:0008299
Lapu3g01624 364 Pfam Polyprenyl synthetase 100 334 IPR000092 GO:0008299
Lapu3g01624 364 FunFam Geranylgeranyl diphosphate synthase 70 364 - -
Lapu3g01624 364 ProSitePatterns Polyprenyl synthases signature 1. 149 165 IPR033749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01624 Lapu-Chr3 20827366 20828974 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01624 K13789 - gmx:100785539 549.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01624 3 20827366 20828974 Lapu3g01624 3 20827366 20828974 ECH
Lapu3g01624 3 20827366 20828974 Lapu2g00637 2 5573709 5575046 ECH
Lapu2g00637 2 5573709 5575046 Lapu3g01624 3 20827366 20828974 PCT