Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01620 ATGGCACCTACCTCGACATTTTCCTTCTTCTTCCTCTTCACCTTCCAATATGCCATCGTCGTGATTTCCGGACAAACAACCACCACCACCCACCACCGTTTTAAAGAAGCTCCGAAATTCTACAACTCCCCCACATGCGAGACCCTCCAGCACCACCCCAATCACACGTGCCCCCGCAACGCAGTCCACGTGGCAATGACCCTGGACGCGGAGTACCTGCGAGGCTCCATGGCAGCCATCTTCTCCGTGCTTCAACACACCTCGTGCCCGGAAAACGTAATCTTTCACTTCGTCTCCGCGGCTTCTCAACCTTCCTCCTTCGCAACCCTGAACCTAACACTTACCATTTCCTTTCCTTACTTGAATTTCAATATTTACCCCTTCGATGACGATGCCGTTTCGCGCCTCATCTCTACCTCCATACGCTCCGCCCTCGACACGCCCCTCAACTACGCGAGAAGCTACCTTTCAAACCTTCTCCCTCGCTGCGTCGGCAGAGTCGTCTACCTTGATTCCGACATAATCCTTGTTGACGACATCGCCAAACTCGCCGCCACGCCGCTCGGTGACACCGAGGTCCTCGCCGCGCCGGAGTACTGCTCCGCTGACTTCTCCACCTACTTCACGCCCTCGTTCTGGGCCAACCCCTCGCTTTCGCTATCCTTCTCGAACAGGACGCGGCCCTGCTACTTCAACACCGGCGTGATGGTGATCGACCTTGGGCGGTGGCGCGATGCGGATCTACGAGCTCGGGTCGCTTCCACCGTTCCTGTTGGTTTTCGCTGGGAGGATTGCGGCGGTGGATCGCCGGTGGAACCAGCACGGGCTCGGTGGGGATAA 840 0.5738 MAPTSTFSFFFLFTFQYAIVVISGQTTTTTHHRFKEAPKFYNSPTCETLQHHPNHTCPRNAVHVAMTLDAEYLRGSMAAIFSVLQHTSCPENVIFHFVSAASQPSSFATLNLTLTISFPYLNFNIYPFDDDAVSRLISTSIRSALDTPLNYARSYLSNLLPRCVGRVVYLDSDIILVDDIAKLAATPLGDTEVLAAPEYCSADFSTYFTPSFWANPSLSLSFSNRTRPCYFNTGVMVIDLGRWRDADLRARVASTVPVGFRWEDCGGGSPVEPARARWG* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01620 279 PANTHER GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 14 253 - -
Lapu3g01620 279 SUPERFAMILY Nucleotide-diphospho-sugar transferases 62 252 IPR029044 -
Lapu3g01620 279 Pfam Glycosyl transferase family 8 63 255 IPR002495 GO:0016757
Lapu3g01620 279 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 62 261 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01620 Lapu-Chr3 20548529 20549581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01620 32 261 Glycosyltransferase AT3G50760 58.621 1.93e-94 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01620 K20893 - gmx:100805007 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01620 3 20548529 20549581 Lapu3g01620 3 20548529 20549581 ECH
Lapu3g01620 3 20548529 20549581 Lapu2g00632 2 5535631 5537782 ECH
Lapu2g00632 2 5535631 5537782 Lapu3g01620 3 20548529 20549581 PCT