Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01619 ATGCCACCTTCTTACTGTGTTAAAGAGAGAAAAGCATGTGTGAAATGGGTGGAGAAATATTTCAAAGATTGCCTCTGCAACATGAAAGATGAAATCTCTTTCAGTTTCGGTCTCACAAGTCTTGTCTTCTGGGGAGTAGCTGAAATTCCTCAGATAATCACCATTTTTCGTACTAAGAAAAGTCATGGAGTATCCCTCGTCTTTCTCCTCACTTGGGTTGCAGGGGACATATGCAATTTGTCTGGGTGCCTTCTTGAACCAGCTACTTTGCCAACACAGTATTACACAGCTCTGCTTTACACAATCACTACGATCGTCTTGCTACTGCAAATCATATATTATGACTACATAAGCAGTTGGTACAAACGTCGTCAGAAGGTTAACCAGAAAAGGGATCAAGAAGAAGAGAAGAAACCATTGAAGCCGCCGAAACCAACTTTCGGGTCTGGAATTCCAATACCAAATGGCACACGCAAAGCAGTATCTAGACATGAGCACTATTATATGTCAGCAAGATCATTGGCTGGGAGTGGCACTCCTCCCTGGGGAACTTACTTGAGAGCTGCCAAAAGTGGTCCTTCAGCCATGGAATCCATAGATGACTCATCTTCCGAGGATGATGAAGCTTATCCACCTTCCTCAAAAAATCCTCCAACCAAAGCTATGTCAATTCCACGTCCTGCAGTTGGAAGTTATGGTACATTTCTAGCAGCTGCTATTAATTTGCCTCTCAAGGCTAATGCTTTGAGAGAAGGATACATAAGATTTGGTGGAAGAAAACTTTTGCAGGAATACGAGACACACAGTACATTTGGTCAATGGTTGGGATGGCTTATGGCTGCTATCTATATAAGTGGTCGGCTTCCTCAAATATGGTTGAACATTAAAAGAGGCAGTGTGGAGGGCTTAAATCCTTTCATGTTCGTCTTTGCTTTGGTCGCTAATGTCACTTATGTTGGAAGTATTCTTGTGAGAACTACAGAAATGGAAAGCATCAAAGCTAATATGCCATGGTTATTGGATGCAGCATTATGCGTAGCATTGGACCTTTTCATAATATTGCAGTACATCTACTATAGATACTTTCGAAGGAGAGAAGGAAAAGGAGACTACTACGAAGAGGAAAAGGCTGCGCCATCTTGCTTTTGTAGCTAG 1155 0.4208 MPPSYCVKERKACVKWVEKYFKDCLCNMKDEISFSFGLTSLVFWGVAEIPQIITIFRTKKSHGVSLVFLLTWVAGDICNLSGCLLEPATLPTQYYTALLYTITTIVLLLQIIYYDYISSWYKRRQKVNQKRDQEEEKKPLKPPKPTFGSGIPIPNGTRKAVSRHEHYYMSARSLAGSGTPPWGTYLRAAKSGPSAMESIDDSSSEDDEAYPPSSKNPPTKAMSIPRPAVGSYGTFLAAAINLPLKANALREGYIRFGGRKLLQEYETHSTFGQWLGWLMAAIYISGRLPQIWLNIKRGSVEGLNPFMFVFALVANVTYVGSILVRTTEMESIKANMPWLLDAALCVALDLFIILQYIYYRYFRRREGKGDYYEEEKAAPSCFCS* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01619 384 PANTHER SEVEN TRANSMEMBRANE PROTEIN 1-RELATED 3 363 - -
Lapu3g01619 384 MobiDBLite consensus disorder prediction 128 142 - -
Lapu3g01619 384 Pfam PQ loop repeat 272 325 IPR006603 -
Lapu3g01619 384 Pfam PQ loop repeat 32 88 IPR006603 -
Lapu3g01619 384 MobiDBLite consensus disorder prediction 194 225 - -
Lapu3g01619 384 Gene3D - 271 370 - -
Lapu3g01619 384 Gene3D - 35 134 - -
Lapu3g01619 384 FunFam Vacuolar membrane PQ loop repeat protein 271 368 - -
Lapu3g01619 384 FunFam PQ-loop repeat family protein / transmembrane family protein 32 128 - -
Lapu3g01619 384 MobiDBLite consensus disorder prediction 128 156 - -
Lapu3g01619 384 SMART ctns 285 316 IPR006603 -
Lapu3g01619 384 SMART ctns 46 77 IPR006603 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01619 Lapu-Chr3 20535795 20540611 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01619 K23678 - gmx:100787660 618.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01619 3 20535795 20540611 Lapu3g01619 3 20535795 20540611 ECH
Lapu2g00631 2 5525150 5529875 Lapu3g01619 3 20535795 20540611 PCT