Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01302 ATGGAACATCACAAACCCTTGTTACCTACTTCCTCTCACGCCGCTCCAAACCCACGCACTCGCAAGGACCTTCTACTCGTCGTTTGCGGCTTGCTCTTGCTCTCTTCCCTTGTCGCCTTTCGGGGTTACAGGGCCTCCTACGTGCCTCACGCTCACGTCTCATCGCCTACATTCACCCATGAACAAGAACAACAACATCAACAACACAGTCCCACATCGGTGCCTTCTCCCAAATGGTACCCTGTTTCAAGGGGTGTTTCTTCCGGGGTGTCGGAGAAGTCATCGAACATGTTATTCACCGGTGAAGGAGGAGCTTCCGAAGCATTTCCTTGGGACAATAGCATGTTGTCTTGGCAGAGAACTTCTTTTCACTTCCAGCCAGAGAAAAACTGGATGAACGTATGCGTTTCAGGTCCTATGTACTACAAGGGATGGTATCACTTTTTCTACCAATACAATCCAAACGGTGCAGTTTGGGGTGACATAGTTTGGGGACACGCGGTGTCAAGGGACATGATCCATTGGCTTCACCTTCCATTGGCAATGGTGGCTGATCAATGGTATGACAAGCAAGGTGTGTGGACAGGTTCAGCCACCATCTTACCTAATGGTGAAATCATCATGTTATACACAGGTTCCACCAATGAGTCAGTGCAAGTTCAAAACCTTGCATACCCTGCTGACCCCTCTGACCCTCTCCTCGTGGATTGGATCAAACACCCTGGGAACCCAGTTTTGGTCCCACCACCAGGCATTGGTGCTAAGGACTTTCGTGACCCCACAACTGCATGGCTCACATCTGAAGGAAAGTGGCGCATCACCATAGGGTCCAAGCTTAACAAAACTGGCATTGCCTTGGTTTATGACACTGAGGACTTCAAGACCTATGAGCTTCAGAAGGGGTTGCTTCGTGCCGTCCCTGGCACTGGCATGTGGGAGTGTGTGGACTTCTTCCCTGTGTCCAAGAAAAACGAAAACGGATTGGATACCTCTATTAATGGAGCTGGGGTGAAGCATGTCATGAAGGTGAGCCTGGATGATGATAGACATGATTACTACACCATAGGGACATATGATGAGAACAAAGTTTTGTTCACACCAGATGATGTTAAGAATGATGTTGGTATTGGTTTAAGATATGACTATGGAATATTCTATGCATCCAAGACATTTTATGATCAGAATAAGGATAGGAGAATTTTGTGGGGTTGGATTGGAGAGTCTGACAGTGAATACGCAGATGTGACCAAAGGGTGGGCTTCAGTTCAGAGTATTCCAAGAACTGTGAAGCTGGATAAGAAGACTGGTAGCAACTTACTTCAGTGGCCTGTTGCTGAGGTGGAGAGTTTGAGATTGAGAAGTGATGAATTCAACAATTTGAAGGCTAAACCAGGATCAGTTGTTTCACTGGATATAGAAACAGCCACACAGTTGGACGTTGTTGCGGAGTTTGAGATAGACACGGAATCCCTGGAGAAAACAGCTCAATCCAATGAGGATTTCACGTGCAGCACTAGTGGTGGAGCTGCACAACGTGGTGCCTTAGGACCTTTTGGTCTTCTGGTTTTGGCTGATGAGGGACTTTCTGAGTATACTCCTGTGTATTTCTATGTCATTAAAGGAAGAAATGGAACTCTTAGGACTTCCTTTTGCTCCGATCAATCGAGGTCTTCTGAGGCCAATGATGTTCGCAAGCAAATCTTTGGGAGCGTTGTTCCGGTACTTAAAGGCGAAAAGTTTTCCTTACGGATGCTGGTGGACCATTCTATTGTTGAAAGCTTTGCTCAAGGTGGAAGAACGTGTGTGACATCTCGGGTATATCCAACAAAGGCAATCTATGGAGCTGCTAGATTGTTCTTGTTCAACAATGCTACTGAGGCCACTGTGACAGCCTCACTCAAAGTTTGGCAAATGAATTCAGCATTCATACGGCCATTCCCATTCCACCCAGATCAGAAGAGCTAA 1965 0.4672 MEHHKPLLPTSSHAAPNPRTRKDLLLVVCGLLLLSSLVAFRGYRASYVPHAHVSSPTFTHEQEQQHQQHSPTSVPSPKWYPVSRGVSSGVSEKSSNMLFTGEGGASEAFPWDNSMLSWQRTSFHFQPEKNWMNVCVSGPMYYKGWYHFFYQYNPNGAVWGDIVWGHAVSRDMIHWLHLPLAMVADQWYDKQGVWTGSATILPNGEIIMLYTGSTNESVQVQNLAYPADPSDPLLVDWIKHPGNPVLVPPPGIGAKDFRDPTTAWLTSEGKWRITIGSKLNKTGIALVYDTEDFKTYELQKGLLRAVPGTGMWECVDFFPVSKKNENGLDTSINGAGVKHVMKVSLDDDRHDYYTIGTYDENKVLFTPDDVKNDVGIGLRYDYGIFYASKTFYDQNKDRRILWGWIGESDSEYADVTKGWASVQSIPRTVKLDKKTGSNLLQWPVAEVESLRLRSDEFNNLKAKPGSVVSLDIETATQLDVVAEFEIDTESLEKTAQSNEDFTCSTSGGAAQRGALGPFGLLVLADEGLSEYTPVYFYVIKGRNGTLRTSFCSDQSRSSEANDVRKQIFGSVVPVLKGEKFSLRMLVDHSIVESFAQGGRTCVTSRVYPTKAIYGAARLFLFNNATEATVTASLKVWQMNSAFIRPFPFHPDQKS* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01302 654 SMART glyco_32 124 598 IPR001362 GO:0004553|GO:0005975
Lapu3g01302 654 Pfam Glycosyl hydrolases family 32 C terminal 446 637 IPR013189 -
Lapu3g01302 654 Pfam Glycosyl hydrolases family 32 N-terminal domain 124 443 IPR013148 -
Lapu3g01302 654 Gene3D - 455 638 - -
Lapu3g01302 654 SUPERFAMILY Concanavalin A-like lectins/glucanases 443 642 IPR013320 -
Lapu3g01302 654 Pfam Beta-fructofuranosidase, N-terminal domain 4 116 IPR021792 GO:0004564
Lapu3g01302 654 Gene3D Glycosyl hydrolase domain; family 43 128 454 IPR023296 -
Lapu3g01302 654 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 113 641 - -
Lapu3g01302 654 MobiDBLite consensus disorder prediction 56 78 - -
Lapu3g01302 654 CDD GH32_Fruct1-like 130 431 - -
Lapu3g01302 654 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 455 638 - -
Lapu3g01302 654 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 128 455 - -
Lapu3g01302 654 MobiDBLite consensus disorder prediction 56 77 - -
Lapu3g01302 654 SUPERFAMILY Arabinanase/levansucrase/invertase 117 444 IPR023296 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01302 Lapu-Chr3 14226376 14231580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01302 2 646 Glycoside Hydrolase AT1G12240 62.651 0.0 819
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01302 K01193 - gmx:100788844 1176.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01302 3 14226376 14231580 Lapu3g01302 3 14226376 14231580 ECH
Lapu2g00335 2 2750734 2754470 Lapu3g01302 3 14226376 14231580 PCT