Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01122 ATGGCGCACACAGGTAACAGTTCAATTCACGGGTCGAGTTCGCGGCCTCAGTTATTGGATCTCAGTAAAGCAGAAATTCAAGGAAACGTGGAAGAGAAGTATCCATCTATTTTGTTACCCAATCAGTCTCATGATATATCGTACCTCGCTCTTGACATTGGAGGATCTCTTATAAAGTTGGTGTACTTTTCAAGACACCAAGATCAATCAACCAATGATAAAAGGATGAGAAATGTGAAGAATCGACTGGGATTTCCCAGTAACAGGAGAAGCTATCCTATTCTGGGTGGAAGGCTTCATTTTGTGAAGTTTGAGACTAGGAAGATTAACGAGTGCTTAGACTTCATTTATTCAAAGAAGCTTCACTTCGGTGGTGGGGAATCTCGTTATTCTGATGGCTCAACTGAATTAAATGCCATAATTAAGGCTACTGGTGGTGGAGCACACAAATTTGCTGATCTTTTCAGAGAAAGACTTGGACTTAGTCTCGACAAGGAAGATGAAATGAGCTGCCTTGTAGCAGGAGCAAATTTCTTGCTGAAGGCGATTCGTCATGAAGCTTTTACACACATGGAGGGCCAGAAAGAGTTTGTTCAAATTGACCCTAATGATTTGTTTCCTTATCTTCTAGTTAATATTGGATCTGGTGTTAGTATGATCAAGGTTGATGGGGATGGAAAATTTGAGAGGGTCAGTGGGACTAATGTTGGTGGTGGTACTTATTGGGGCTTGGGAAGGCTGTTAACAAAGTGTGAGAGCTTTGATGAATTACTTGAGTTGAGTCAGAAAGGAGATAATAGAAATACTGACATGCTTGTTGGGGACATTTATGGTGGCATGGACTATGCTAAGATTGGCCTATCGGCTTCTACCATTGCTTCAAGTTTTGGCAAGGCTGCCTCAGAAAAAAAGGGACTTGAAGATTTCAGACCTGAAGATATATCACTTTCTCTTCTGCGAATGATATCATACAATATTGCCCAAATATCCTACTTAAATGCATTGCGATTTGGGTTGAAGCGAATATTTTTTGGAGGATTTTTTATAAGGGGTCATGCCTATACCATGGATGCTATTTCTTTTGCAATTCATTTCTGGTCTAATGGGGCTGCACAAGCAATGTTTTTGCGACATGAAGGATTTCTGGGAGCATTAGGTGCATTTATGAGCTACGAAAAGCATGGTTTAGATGACCTCATGGTTCATCAATTAGTTGAAAGATTCCCAATGGGTGCTCCATATACGGGAGGCGAGATTCATGGTCCCCCACTTAGGGATTTGAATGAGAAGATTTCGTGGATGGAGAAGTTTCTGCAGAAAGGAACTGAGATCACTGCCCCTGTGCCGATGGCTCGTCCTGGAACCACTGGACTTGGGGGTTTTGAAGTTCCTTTGTCAAAAGGAAGTATTCTGCGATCTGATGCTAGCGCACTAAATGTTGGTGTCCTTCATCTAGTACCCACTTTAGAGGTGTTCCCATTATTGGCAGACCTGAAAATGTATGAACCTAATACAATTGATCTCTCAGATCACAGTGAATTAGAGTATTGGTTCAAAATTTTGTCGGAGCACTTGCCTGGTCTTGTGGCCAAGGCTGTAGCAAGTGAAGGTGGGACTGATGATGCCAAAAGAAGGGGTGATGCTTTTGCTCGTGCGTTTTCTGCCCACCTGACTAGGTTAATGGAGGAGCCTGCTGCATACGGCAAATTAGGTCTGGCCAGACTACTGGAGATGAGGGAAGAGTGCTTGAGGGAATTCCATTTTTTTGATGCTTATATAAGTATAAAGCAGAGGGAAAATGAAGCATCAATTGCTGTCTTACCTGATTTGTTGATGGAGCTTGATAGTCTGGATGAGGAAACAAGATTACTTACTCTAATTGAAGGTGTTCTTGCTGCAAACATTTTTGATTGGGGGTCTCAAGCATGTGTAGATCTCTATCATAAAGGAACTATTATTGAAATTTACAGAATGAGTCGCAACAAAATGCGGAGACCTTGGCGAGTGGATGACTTTGATGTCTTTAAAGAGAGAATATTAGGAACTGGGGACAAGAAACCACCCCCACATAGAAGAGCTTTACTTTTTGTGGATAATTCAGGTGCTGACATTGTTCTTGGGATGCTTCCCCTCGCACGAGAACTCCTCCGTCGTGGAACTGAAGTGGTCCTGGTTGCAAATTCCCTTCCTGCTTTGAATGATGTGACTGCAATGGAGCTTCCTGACATTGTTGCTGAGGCTGCCAAGCACTGTGACATTCTTAGGCGAGCTGCTGAATCTGGTGGCTTGCTTGTTGATGCAATGAGTACTACCTTGGACAGTCCTAGAGAAAATTCGTCTTCTGTTCCCTTGATGGTTGTTGAGAATGGGTGTGGTAGTCCATGTATAGACTTGAGACAGGTCAGCTCTGAGCTGGCAACTGCTGCTAAAGATGCCGATTTGATAATTTTGGAAGGGATGGGTAGAGCTCTTCATACCAATCTCAATGCCCGGTTTAAGTGTGATGCTTTGAAGCTTGCAATGGTGAAAAACCAGAGATTGGCTGAAAAGTTGATTAACGGGAACATATACGACTGTATTTGCAAATACGAGCCTGCTAACTGA 2604 0.427 MAHTGNSSIHGSSSRPQLLDLSKAEIQGNVEEKYPSILLPNQSHDISYLALDIGGSLIKLVYFSRHQDQSTNDKRMRNVKNRLGFPSNRRSYPILGGRLHFVKFETRKINECLDFIYSKKLHFGGGESRYSDGSTELNAIIKATGGGAHKFADLFRERLGLSLDKEDEMSCLVAGANFLLKAIRHEAFTHMEGQKEFVQIDPNDLFPYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCESFDELLELSQKGDNRNTDMLVGDIYGGMDYAKIGLSASTIASSFGKAASEKKGLEDFRPEDISLSLLRMISYNIAQISYLNALRFGLKRIFFGGFFIRGHAYTMDAISFAIHFWSNGAAQAMFLRHEGFLGALGAFMSYEKHGLDDLMVHQLVERFPMGAPYTGGEIHGPPLRDLNEKISWMEKFLQKGTEITAPVPMARPGTTGLGGFEVPLSKGSILRSDASALNVGVLHLVPTLEVFPLLADLKMYEPNTIDLSDHSELEYWFKILSEHLPGLVAKAVASEGGTDDAKRRGDAFARAFSAHLTRLMEEPAAYGKLGLARLLEMREECLREFHFFDAYISIKQRENEASIAVLPDLLMELDSLDEETRLLTLIEGVLAANIFDWGSQACVDLYHKGTIIEIYRMSRNKMRRPWRVDDFDVFKERILGTGDKKPPPHRRALLFVDNSGADIVLGMLPLARELLRRGTEVVLVANSLPALNDVTAMELPDIVAEAAKHCDILRRAAESGGLLVDAMSTTLDSPRENSSSVPLMVVENGCGSPCIDLRQVSSELATAAKDADLIILEGMGRALHTNLNARFKCDALKLAMVKNQRLAEKLINGNIYDCICKYEPAN* 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01122 867 Gene3D - 41 199 - -
Lapu3g01122 867 Gene3D Uncharacterised protein PF01937, DUF89, domain 3 668 865 - -
Lapu3g01122 867 FunFam Pantothenate kinase 2 503 589 - -
Lapu3g01122 867 PANTHER PANTOTHENATE KINASE 23 757 IPR004567 GO:0004594|GO:0005524|GO:0015937
Lapu3g01122 867 FunFam Pantothenate kinase 2 40 199 - -
Lapu3g01122 867 SUPERFAMILY Actin-like ATPase domain 47 186 IPR043129 -
Lapu3g01122 867 Pfam Damage-control phosphatase ARMT1-like domain 574 851 IPR002791 -
Lapu3g01122 867 Pfam Fumble 49 389 IPR004567 GO:0004594|GO:0005524|GO:0015937
Lapu3g01122 867 SUPERFAMILY Actin-like ATPase domain 158 391 IPR043129 -
Lapu3g01122 867 FunFam Pantothenate kinase 2 271 380 - -
Lapu3g01122 867 Gene3D - 270 380 - -
Lapu3g01122 867 PIRSF PanK_long 1 867 IPR015844 GO:0004594|GO:0015937
Lapu3g01122 867 Gene3D - 504 588 IPR035073 -
Lapu3g01122 867 FunFam Pantothenate kinase 1 48 185 - -
Lapu3g01122 867 SUPERFAMILY AF1104-like 482 865 IPR036075 -
Lapu3g01122 867 NCBIfam type II pantothenate kinase 49 390 IPR004567 GO:0004594|GO:0005524|GO:0015937
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01122 Lapu-Chr3 12111724 12124908 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01122 K24265 K09680 gmx:100783082 1590.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01122 3 12111724 12124908 Lapu9g00728 9 9415427 9433775 ECH
Lapu3g01122 3 12111724 12124908 Lapu3g01122 3 12111724 12124908 ECH
Lapu3g01122 3 12111724 12124908 Lapu9g00728 9 9415427 9433775 PCT