Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01115 ATGGGAGTTAATGATGAAAGGGGAGTAAATATAATGAATAGGTTTGGTTACACTTTACCCTTGAAGGGAACCTCAACTCCAAGAAGTTCCTTGAGTCTTCAAAGACGCCAAAGTATTGGTCCAACTTTTCCAGTTGAGAAGGTGGTTGACAGTCCCTCAAATCATCGGCTTCATGGAAATGTTTGTGACAAGCAAACCTCTGTCCAATCATCCTCAAGACGAAGTTTTGGATCCGATGTTGGTGAGTCTAGATCCTATTCGAAATTGTTCTATCTATTTGGAGGGCAGAAGAGAGAGGTGGAGACAGTGAAAGATGAAGTGGAGAAAAAGAAACAAGGGAATTCTAGCAGCGAAGCTTCTTCTACAAGGAGTAGTTTGTCCAATGATAAGAAGCTAGACAAGGTGGGTGAGACTCAGTCAAGAACTGCAAGCTGTGTTGTTCCGCAAAAACCAAAGAAAGCATCACAATCACAGTTGTCCCCAGAAACTCCATCAAAGTTAAGACCAATAGGAAAAAACCCTCCTGCAAAACCTCCTGTCGATAGGAAGAATGACAACTCTTTGAGAAAACAAAACACCGGTGTTTACCGTGTGAGAAAAACGGTTGGTGGAAGATCACTATCACAAGGTCAAATTGATATTTCCTCTGGATCAGCATTGGATAGGCCTGAACTGGGACAAGCTTTACTAAACCAAGCAAGGGACATGATTTCATCAGGAAATAATCCGAAGAAAGCTCTTGAATTGGCCCTTCAAGCAAAGAAATTGTTCGAGAGAACGGCTGCTTATGGGAGACCAAGTTTAGATTTGGCCATGTGTTTACATGTTATTGCAGTAATATATTGCAGTTTGGGCAATTTCAATGAAGCAGTTCCGATGGTAGAGCGCTCAATTGAGATTCCTGTCATTGAGGACGGCCAACAGCATGCCATTGCTAAATTTGCTGGTCACATGCATCTAGGAGACATTTATGCTATGTCGGGCCAGCTCGAGAAGTCAATTAAGTGCTACACTGCAGGGTTAGAAGTACAAAGGAAGGTTTTGGGAGAAACAGACCCAAGAGTTGGGGAAACCTGTAGGTATGTGGCTGAGGCTAACTTTCAAGCTTTGCAATTTGAGGAGGCAGAGAGGATGTGCCAAATTGCCCTTCATATCCACAGAGAAAATGGTTCACCCTCATCTCTTGAAGAGGCAGCTGATAGAAGGCTAATGGGCCTTATATGTGAAGCAGATGGAAAACATGAAGCAGCCCTAGAGCATCTTGTTTTGGCCAGCATGACAATGGTAGCAAATGGCCAAGAAGTGGAAGTGGCATCTGTTGACTGCAACATTGGAGACACATACTTATCCTTGGCTAGATATGATGAGGCCATCTTTGCATATCAGAGAGCATTGAAAGTTTTCAAGACTCACAAAGGTGAGAACCATCCTGCTGTGGGATCAGTTTTTGTACGCCTGGCTGACTTGTATTGCAGGACATGGAAGATAAGGGAGTCAAAATTTTATTGTGAGGAGGCTCTTAAAATCTATGAGAATCCCATGCCTGGGGTCCCTCCAGAGGAGACTGCTAGTGGTTTTATGAATGTCTCAGCCATCTACGAGTCAATGAATGAGCTAGAAGAGGCACTTAAGTTACTTCACAAGGCACTAACCATACTTAATGATGCCTCTGGTCAGATAAACACAATAGCAGGAATTGAAGCTCAGATGGGGGTCATGTACTATTTGTTGAACAACTACACTGAATCTTATAATACATTCAAGAATGCCGTGTCGAAGCTTCGTGATACTGGAGAAAAGAAATCGGCCTTCTTTGGTACTGTTCTTAATCAAATGGGACTTGCTTGTGTGCAACTCCAATCCCTAGAAGAGGCTGCAGAATTATTTGAGGAAGCAAAGGTTGTTTTGGAACAAGAGAATGGACCCTATCACACTGAAACACTTGGAGTATATGGCAATCTTGCTGGCACGTATGATGCAATTGGAAGGTTGGATGAGGCAATTGAAATTCTGGAAAACGTTGTGGTAATGAGGGAGGAAAAGCTTGGGACAGCAAATCCCGACGTTGCTGATGAGAAGAGAAGGTTGGACGAGTTGTTGAAGGAAACAGGCAAAATTCGGAACAGAAAAGCCAAGTCACTGGAGAACCTTTTTGATAGGTCTGGTATG 2169 0.4315 MGVNDERGVNIMNRFGYTLPLKGTSTPRSSLSLQRRQSIGPTFPVEKVVDSPSNHRLHGNVCDKQTSVQSSSRRSFGSDVGESRSYSKLFYLFGGQKREVETVKDEVEKKKQGNSSSEASSTRSSLSNDKKLDKVGETQSRTASCVVPQKPKKASQSQLSPETPSKLRPIGKNPPAKPPVDRKNDNSLRKQNTGVYRVRKTVGGRSLSQGQIDISSGSALDRPELGQALLNQARDMISSGNNPKKALELALQAKKLFERTAAYGRPSLDLAMCLHVIAVIYCSLGNFNEAVPMVERSIEIPVIEDGQQHAIAKFAGHMHLGDIYAMSGQLEKSIKCYTAGLEVQRKVLGETDPRVGETCRYVAEANFQALQFEEAERMCQIALHIHRENGSPSSLEEAADRRLMGLICEADGKHEAALEHLVLASMTMVANGQEVEVASVDCNIGDTYLSLARYDEAIFAYQRALKVFKTHKGENHPAVGSVFVRLADLYCRTWKIRESKFYCEEALKIYENPMPGVPPEETASGFMNVSAIYESMNELEEALKLLHKALTILNDASGQINTIAGIEAQMGVMYYLLNNYTESYNTFKNAVSKLRDTGEKKSAFFGTVLNQMGLACVQLQSLEEAAELFEEAKVVLEQENGPYHTETLGVYGNLAGTYDAIGRLDEAIEILENVVVMREEKLGTANPDVADEKRRLDELLKETGKIRNRKAKSLENLFDRSGM 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01115 723 SUPERFAMILY TPR-like 247 552 IPR011990 GO:0005515
Lapu3g01115 723 Coils Coil 536 556 - -
Lapu3g01115 723 MobiDBLite consensus disorder prediction 138 164 - -
Lapu3g01115 723 ProSiteProfiles TPR repeat profile. 523 556 IPR019734 GO:0005515
Lapu3g01115 723 SMART tpr_5 523 556 IPR019734 GO:0005515
Lapu3g01115 723 SMART tpr_5 314 347 IPR019734 GO:0005515
Lapu3g01115 723 SMART tpr_5 648 681 IPR019734 GO:0005515
Lapu3g01115 723 SMART tpr_5 564 597 IPR019734 GO:0005515
Lapu3g01115 723 SMART tpr_5 271 304 IPR019734 GO:0005515
Lapu3g01115 723 SMART tpr_5 606 639 IPR019734 GO:0005515
Lapu3g01115 723 SMART tpr_5 356 389 IPR019734 GO:0005515
Lapu3g01115 723 SMART tpr_5 438 471 IPR019734 GO:0005515
Lapu3g01115 723 SMART tpr_5 480 513 IPR019734 GO:0005515
Lapu3g01115 723 Gene3D Tetratricopeptide repeat domain 213 311 IPR011990 GO:0005515
Lapu3g01115 723 Pfam Tetratricopeptide repeat 437 512 - -
Lapu3g01115 723 Pfam Tetratricopeptide repeat 607 672 - -
Lapu3g01115 723 MobiDBLite consensus disorder prediction 24 39 - -
Lapu3g01115 723 Gene3D Tetratricopeptide repeat domain 315 424 IPR011990 GO:0005515
Lapu3g01115 723 MobiDBLite consensus disorder prediction 24 81 - -
Lapu3g01115 723 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 45 720 - -
Lapu3g01115 723 MobiDBLite consensus disorder prediction 58 81 - -
Lapu3g01115 723 SUPERFAMILY TPR-like 454 672 IPR011990 GO:0005515
Lapu3g01115 723 MobiDBLite consensus disorder prediction 103 198 - -
Lapu3g01115 723 Coils Coil 619 639 - -
Lapu3g01115 723 ProSiteProfiles TPR repeat profile. 438 471 IPR019734 GO:0005515
Lapu3g01115 723 Gene3D Tetratricopeptide repeat domain 425 597 IPR011990 GO:0005515
Lapu3g01115 723 Gene3D Tetratricopeptide repeat domain 598 716 IPR011990 GO:0005515
Lapu3g01115 723 Pfam MalT-like TPR region 240 429 IPR041617 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01115 Lapu-Chr3 12037345 12040336 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01115 - - gmx:100813461 1068.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01115 3 12037345 12040336 Lapu9g00735 9 9667459 9671790 ECH
Lapu3g01115 3 12037345 12040336 Lapu3g01115 3 12037345 12040336 ECH
Lapu3g01115 3 12037345 12040336 Lapu9g00735 9 9667459 9671790 PCT