Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00781 ATGGGTTGTCAGATAAGACTTCTGGGTCTGTGTCTATGGATGTACTTGGCAAGCTTAAGGTTCATTGGAGTGGATGCTGTGTATGGAAGAGGAGGTGAAGCTGAGAAAGGGATTGTTTTAGTCCATGGGAAAACTTCTATTGGAAGGATTGATGATGATTTTGTCTGTGCAACTCTTGATTGGTGGCCTCCTCAGAAATGTGACTATGGAAAATGTAGTTGGGGTCATGCTTCTCTGCTTAATCTGGACCTCAACAACAAAATTTTGTTAAATGCAGTAAAAGGTATCCCTGCCTTTGAATGTTTTGCAGCCTTTTCATCCTTGAAAATTAGATTAGGTGGCACTTTGCAAGACAAGGTCATATATGGAACAGAAGATAATCGGCAACCCTGTTCTCCTTTTGTTTTGAATGCTAATGAAATGTTTGGTTTCACTCGAGGGTGCTTACCGATGCATAGGTGGGATGAGCTAAACAGCTTTTTCCAGAAAGCAGGGGCTAAGATTATCTTTGGACTAAATGCTCTTGCCGGAAAATCTATAAAGTCTGGTTCTACTGTTGGACCCTGGGACTGGACCAACGCTGAATCTTTAATACGATACACCGTCAGAAAGAAGTACCTCATTCATGGTTGGGAACTTGGTAAGAGTAAGCTGCGGGCAGGGAATGAATTGTGTGGAAATGGAATTGGAGCAAGTGTTTCAGCAGATCAGTATGCTTCTGATGTAGCTGCTTTAAGAAATATAGTTCAAAATGCTTATAGAGGGATTGAACCAAAGCCACTAGTTATTGCACCTGGAGGCTTCTTTGACTCAAATTGGTTCAAGGAATTTATAAGCAAATCTGGTAAATCTGCAGATGTGGTCACCCACCACATTTATAACCTTGGGCCAGGAGTTGATGACCACCTAACTGAAAAAATTCTTGACCCTTCCTATCTGGATGGAGAGGCTAACACATTCAGCAGCCTCAAAGGTATACTTCAAAGTTCAGCAACCAGGGCAAAATCATGGGTTGGTGAGGCAGGAGGGTCTTATAATAGCGGCCATCATCTTGTGTCTGATGCATTTGTCTACAGTTTCTGGTATCTGGACCAGCTTGGCATGTCAGCTGTTTATGGCACCAGAACATACTGCAGACAAAGTTTGATAGGAGGAAACTATGGTTTACTGAATACTAGTACTTTCATGCCAAATCCAGACTATTATAGTGCACTTCTATGGCACCGACTCATGGGAGGGCGTGTCCTCTCAACCACCTTCTATGGTACAAAGAAGATAAGAACTTATGCACACTGTGCAAAGGAATCCAAAGGGATCACAATCCTAGTGCTCAACTTGGACAACAGCACCACTGTTCAAGTCAACGTGGCCTTAAAATTTAACAAGTTATCTCACCATGGTGTGGATGAACCTGCAAGACGAGAGTACCATTTAACAGCACCAGACAGGAATTTACACAGCCAAATCATGTTGCTAAATGGAAAAATTTTAGGTGTAAACTCAGCTGGTGAAATTCCTCCTTTGGAGCCTCTATATGTAGACTCAACAAAGCCAATAACAGTTGGTCCTCTATCTATTGTATTTGCTCATATACCAAATGTTCTTCTTTCAGCATGCAGCTAG 1623 0.4208 MGCQIRLLGLCLWMYLASLRFIGVDAVYGRGGEAEKGIVLVHGKTSIGRIDDDFVCATLDWWPPQKCDYGKCSWGHASLLNLDLNNKILLNAVKGIPAFECFAAFSSLKIRLGGTLQDKVIYGTEDNRQPCSPFVLNANEMFGFTRGCLPMHRWDELNSFFQKAGAKIIFGLNALAGKSIKSGSTVGPWDWTNAESLIRYTVRKKYLIHGWELGKSKLRAGNELCGNGIGASVSADQYASDVAALRNIVQNAYRGIEPKPLVIAPGGFFDSNWFKEFISKSGKSADVVTHHIYNLGPGVDDHLTEKILDPSYLDGEANTFSSLKGILQSSATRAKSWVGEAGGSYNSGHHLVSDAFVYSFWYLDQLGMSAVYGTRTYCRQSLIGGNYGLLNTSTFMPNPDYYSALLWHRLMGGRVLSTTFYGTKKIRTYAHCAKESKGITILVLNLDNSTTVQVNVALKFNKLSHHGVDEPARREYHLTAPDRNLHSQIMLLNGKILGVNSAGEIPPLEPLYVDSTKPITVGPLSIVFAHIPNVLLSACS* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00781 540 PANTHER HEPARANASE-RELATED 33 539 - -
Lapu3g00781 540 FunFam heparanase-like protein 3 74 409 - -
Lapu3g00781 540 Gene3D Glycosidases 91 409 - -
Lapu3g00781 540 SUPERFAMILY (Trans)glycosidases 50 411 IPR017853 -
Lapu3g00781 540 Pfam Glycosyl hydrolase family 79, N-terminal domain 38 367 IPR005199 GO:0016020|GO:0016798
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00781 Lapu-Chr3 8226368 8230066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00781 31 540 Glycoside Hydrolase AT5G61250 45.421 6.94e-167 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00781 K07964 - gmx:100778008 973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00781 3 8226368 8230066 Lapu3g00781 3 8226368 8230066 ECH
Lapu3g00781 3 8226368 8230066 Lapu9g00273 9 2669638 2674100 PCT