Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00562 ATGATGTACGAGCAGCAGCAACGTTTTCAGCAGCCGATGATGTCTGTGAAGGTGGACATGAGGAAGAAAACTGATAGAAGCAAAGGCATAGAGGAAGAGAGGCTTGAAATAGTAGACTTGAGTGGCATGTCCTTGGACTCCCTTCCCAACCCCTCTCTTAATTTGGCCACCATTTGCAAGTTGGACCTCTCTAATAACAATCTTCAGAATATACCAGAGTCCTTAACAGCGAGACTGCTGAACATGGTGGTGTTAGACGTGCACTCCAACCAGCTTAGGTACCTTCCCAACTCCATTGGCTGCCTCTCTAAGCTCAAGATTTTGAATGTCTCTGGCAACCTCATCGAATACCTGCCCAAAACAATTGAAAATTGCAGAAGTTTAGAAGAACTGAATGCGAACTTCAACAAGTTGATCCAGCTTCCAGACAACATAGGGTACGAGCTGATAAGTCTGAAGAAGCTATCAGTGAACTCGAACAAGCTGGTTTTCCTTCCTCGCTCGACGTCCCACCTGACCGCTCTGAAAATTCTGGACGCGCGCTTGAACTGCCTGAGGTCTCTCCCGGAAGACTTCGAGAACCTGATAAACCTAGAAACTCTGAACGTGAGCCAGAACTTCCAGTACCTGGATTCTCTACCCTACTCGGTGGGGCTCCTCCTCTCCCTGGTGGAACTAGACGCGAGCTACAACAAGATCAGGTCCTTACCGGACTCCATCGGGTGCCTGAAGAAGTTGCAGAAGCTGAGCGTGGAAGGGAATCCTCTGAGTTCGCCGCCGCCGGAAGTGGTGGAGCAGGGGTTGCATGCGGTGAAGGAGTACCTGTGCCAGAAGATGAACGCGGGCCATCAGAGCCCCACGAAGAAGAAGTCGTGGGTGGGGAGGCTGGTGAGGTATGGCACCTTCAACGGACACACCAGAGGTGGGTCCCGAGAGGAACGTGAAGCGTTCATCATGCCTGATTACAGACCAATCGACAGCCTCGCTTCGCCGCGCTACACGGGCATGTTCTCGCCTCGTCGCCTCTTCTCACCCCGCAGTTACTTCACCAACTGA 1056 0.518 MMYEQQQRFQQPMMSVKVDMRKKTDRSKGIEEERLEIVDLSGMSLDSLPNPSLNLATICKLDLSNNNLQNIPESLTARLLNMVVLDVHSNQLRYLPNSIGCLSKLKILNVSGNLIEYLPKTIENCRSLEELNANFNKLIQLPDNIGYELISLKKLSVNSNKLVFLPRSTSHLTALKILDARLNCLRSLPEDFENLINLETLNVSQNFQYLDSLPYSVGLLLSLVELDASYNKIRSLPDSIGCLKKLQKLSVEGNPLSSPPPEVVEQGLHAVKEYLCQKMNAGHQSPTKKKSWVGRLVRYGTFNGHTRGGSREEREAFIMPDYRPIDSLASPRYTGMFSPRRLFSPRSYFTN* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00562 351 ProSiteProfiles Leucine-rich repeat profile. 57 78 IPR001611 GO:0005515
Lapu3g00562 351 SUPERFAMILY L domain-like 35 265 - -
Lapu3g00562 351 Gene3D Ribonuclease Inhibitor 142 277 IPR032675 -
Lapu3g00562 351 Gene3D Ribonuclease Inhibitor 2 141 IPR032675 -
Lapu3g00562 351 PANTHER - 37 258 - -
Lapu3g00562 351 SMART LRR_bac_2 220 239 - -
Lapu3g00562 351 SMART LRR_bac_2 125 144 - -
Lapu3g00562 351 SMART LRR_bac_2 55 74 - -
Lapu3g00562 351 SMART LRR_bac_2 149 168 - -
Lapu3g00562 351 SMART LRR_bac_2 172 191 - -
Lapu3g00562 351 SMART LRR_bac_2 102 121 - -
Lapu3g00562 351 Pfam Leucine rich repeat 60 115 IPR001611 GO:0005515
Lapu3g00562 351 Pfam Leucine rich repeat 151 206 IPR001611 GO:0005515
Lapu3g00562 351 SMART LRR_typ_2 220 242 IPR003591 -
Lapu3g00562 351 SMART LRR_typ_2 102 125 IPR003591 -
Lapu3g00562 351 SMART LRR_typ_2 172 194 IPR003591 -
Lapu3g00562 351 SMART LRR_typ_2 126 148 IPR003591 -
Lapu3g00562 351 SMART LRR_typ_2 55 78 IPR003591 -
Lapu3g00562 351 SMART LRR_typ_2 79 101 IPR003591 -
Lapu3g00562 351 SMART LRR_typ_2 243 266 IPR003591 -
Lapu3g00562 351 SMART LRR_typ_2 149 171 IPR003591 -
Lapu3g00562 351 ProSiteProfiles Leucine-rich repeat profile. 222 243 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00562 Lapu-Chr3 5707068 5710690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00562 53 266 Receptor kinase-like Gene Family AT5G51350 31.390 7.10e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00562 - - gmx:100783239 595.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00562 3 5707068 5710690 Lapu3g00562 3 5707068 5710690 ECH
Lapu3g00562 3 5707068 5710690 Lapu9g00457 9 4917957 4921365 PCT