Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00496 ATGCTGCGTTTGAGAACGCCATTGTTACATCCGTTTTCTCACACGTTCTCGGCCTCCAGACAGCTCCTTAAGGTTCAAGCCCGCCCCTTCAGATCTTCCGTCAAGATGACGTCAGCCAAAACCGTGGAGCACATTGTCCTGTTCAAGGTGAAGGAGGAAACGGAGGCGTCAAAGGTGAGTGAGATGATCAACGGACTTGGCTCCCTGGTGTCGCTGGACACCGTCCTCCACCTCAGCGTGGGCCCACTCCTCCGTAACCGATCCTCTTCTTTAACCTTCACTCACATGCTCCACAGCCGCTACAAGTCCAAGGAGGATCTCCAAGCTTACTCCGCGCACCCTAGCCACGTCAGCGTCGTCAAGGAGAACGTGCTCCCCATCATCGACGACATCATGGCCGTCGATTGGATCGCCGATGGCCTCGCAAACCTCGTTCCGCCGCCGGGCTCGGCGGTTCGTGTAAGCTTCTTGAAATTGAAAGAGGGCGCGGCTGGGGGCGAGGTTTTGGGTGTGGTTAGAGGAATTCCTGAGAGTTTCAAGCAGATTAGTGAGTTCAGTGTCGGCGAGAATTTTTCGCCGGCGAGAGCCAAGGGTTTCTCGATTGCTTCGCTCGCGGTTTTCGCAGGACCGAGCGAGTTGGAGGCCGTGGATTCGAATCAGGAGTTGGTGAATTACCAGAAGGATAAGGTTAGGGATCAGGTGGAGAGTGTGGTCGTCGTTGATTACGTGGTGCCGCCACCTCCTCCTGCTCAGAGTGCGAGCCTTTGA 768 0.5586 MLRLRTPLLHPFSHTFSASRQLLKVQARPFRSSVKMTSAKTVEHIVLFKVKEETEASKVSEMINGLGSLVSLDTVLHLSVGPLLRNRSSSLTFTHMLHSRYKSKEDLQAYSAHPSHVSVVKENVLPIIDDIMAVDWIADGLANLVPPPGSAVRVSFLKLKEGAAGGEVLGVVRGIPESFKQISEFSVGENFSPARAKGFSIASLAVFAGPSELEAVDSNQELVNYQKDKVRDQVESVVVVDYVVPPPPPAQSASL* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00496 255 Gene3D - 33 139 - -
Lapu3g00496 255 ProSiteProfiles Stress-response A/B barrel domain profile. 151 242 IPR013097 -
Lapu3g00496 255 SUPERFAMILY Dimeric alpha+beta barrel 40 141 IPR011008 -
Lapu3g00496 255 Gene3D - 151 246 - -
Lapu3g00496 255 PANTHER - 39 246 IPR044662 -
Lapu3g00496 255 SMART Dabb_2 42 138 IPR013097 -
Lapu3g00496 255 SMART Dabb_2 151 244 IPR013097 -
Lapu3g00496 255 Pfam Stress responsive A/B Barrel Domain 153 244 IPR013097 -
Lapu3g00496 255 Pfam Stress responsive A/B Barrel Domain 42 137 IPR013097 -
Lapu3g00496 255 SUPERFAMILY Dimeric alpha+beta barrel 150 247 IPR011008 -
Lapu3g00496 255 ProSiteProfiles Stress-response A/B barrel domain profile. 42 136 IPR013097 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00496 Lapu-Chr3 5087157 5087924 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00496 - - gmx:100527770 358.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00496 3 5087157 5087924 Lapu3g00496 3 5087157 5087924 ECH
Lapu3g00496 3 5087157 5087924 Lapu9g00398 9 4239720 4240798 PCT