Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00486 ATGACCAACACTCCAATTCCAGATTCCAATCCTCCAAACATCGATGGGGATTCCGATTCTGACATTGCCGCCCTCATCAATGCTCTTTTCGAACCTAACCCCCAATTTCCCTTTCTCGATCACCTCCAAGGATCCACCTCCGACGCCAAAGAATCATCCCTCAAGAGAGGATTTCACACCTCTGATGATTCTTCCCACACTGCAATTCCCCTCAAACGCGGTCGTATTGACAATGTCATCCCCCTCCACACTGATCTCCACGCCGCCTTTCAAATTAAAAACCCTACTCCTCCTCCTCCTATTCTCTCCCCGCCTCCGCCACATGCTGCTACCAGTGGAGACCCTCAGGCTGTCGAAGGGCAGAGGAAGCGCCCGGTCTTTGACTCCGATTTTCTATCCAGGGCTCTCCGTGAAGCTGAATCGGTCTTTCCGCAGAATTCAGGCGATAACGATGTTAACTTTGACATGGAACCTGGAAATTTTAGTGCACCTTATATATCGCTGAATGATTATCGGAGGATTAGGAACATGGAACGTTTCCGACAGATAGCAAAGGAAAGCGCCACTCACTATGCTCGGTTCACCTCGGAGGAGACCGCGGACGAAAGACCGTCGTCTTCTGCGGCGCCTCAGGGAATCGATGATTCCACATCTCCGTTTTCGATCTCGATGAAGGCGATCAAAGAGGGAGCGGCGAAAAAGAAGGGGCGTGATGCGTGGGTTGCGAAGAATCAAAAAAGGGAGAAGAGGGTCTGCGTGCCCTCTTTGCAAGAACTGTGTCTTAAAATTCTCGCGGACAATGCTGATGCCATGGTTTCTCTTGAGGGCGTTCCGGATGAGTTGAGGCACAAGCTTTGCAAACTTCTCTGTGACTCCAGAAAGATGAACCATCACTTTCTTGAACTTCTTCTCAGTGGGTCTCCCACGGAGATTCGCCTGAGAGATTGCTCGTGGTTGACGGTGGAACAGTTCGCCGAGTGTTTTCGTTCGTGTGACACTGGAAGATTGGAGGTGCTGCAACTTGACCAGTGTGGAAGGTGTATACCTGATTATGCATTATTTGGTCCTCTGAGACAGTCACCATGGTGGTTGCCGAGACTAATTAGTCTATCCCTCAGTGGCGCATGCCGTCTTTCAGACAAGGGGTTGCATGTGCTAGTTTCTTCTGCTCCATCACTAAGATCAATTAATTTAAGCCAGTGCTCCCTTCTCTCATCTGTCAGTGTCAATATTTTAGCCCAATCATTAGGATCCCTACTGAAAGAGTTATATCTTGATGATTGCCTAACCATTGATGCTGCACAAATTGTGCCGGCATTGAAGAAACTTGAACACTTAGAAGTATTGTCATTAGCTGGAATTCAAACTGTCTCTGATGAATTTATCGGGGATTATATCACTGCTCGTGGTCACAATATGAAGGAGCTTGTTTTAAAGGACTGTAGAAAATTAACCAATGCATCCATAAAAGTAATTGCGGAGCATTGTCCTGGGTTGTGTGCACTTGATCTTATGTATTTGGACAACTTGACGGATTTATCCATGGGATATCTTACAAATAGCTGTCGAGTACTTCATACATTGAAGCTCTGCCGTAATCCATTCAGTGATGAAGCAATTGCTGCATTTTTGGAGATTGCTGGAGAGTCCTTAAAAGATCTTTCACTTAATAATATTAAGAAGGTTGGGCACCATACGGTCTTATCACTTGCTAGTCATGCAAAAAATTTGCATACTCTAGATCTGTCTTGGTGCCGAAATTTGACAGACAATGAGTTGGGTTTGATTGTAGATAGCTGCTTCTCACTGAGGTTGCTAAAACTTTTTGGATGCTCACTGGTAACAGATGTTTTTCTCAATGGGCACTCAAACCCAGAGATTCAGATCCTTGGAGTGAAGATGTCTCCTTTATTGCAAAATGTCAGAGTGCCTGATATCTGTGAAGGTCCTCTGCGTTATTCATCAGTCTCGGTAGATTTGATATACAAATGA 1992 0.4573 MTNTPIPDSNPPNIDGDSDSDIAALINALFEPNPQFPFLDHLQGSTSDAKESSLKRGFHTSDDSSHTAIPLKRGRIDNVIPLHTDLHAAFQIKNPTPPPPILSPPPPHAATSGDPQAVEGQRKRPVFDSDFLSRALREAESVFPQNSGDNDVNFDMEPGNFSAPYISLNDYRRIRNMERFRQIAKESATHYARFTSEETADERPSSSAAPQGIDDSTSPFSISMKAIKEGAAKKKGRDAWVAKNQKREKRVCVPSLQELCLKILADNADAMVSLEGVPDELRHKLCKLLCDSRKMNHHFLELLLSGSPTEIRLRDCSWLTVEQFAECFRSCDTGRLEVLQLDQCGRCIPDYALFGPLRQSPWWLPRLISLSLSGACRLSDKGLHVLVSSAPSLRSINLSQCSLLSSVSVNILAQSLGSLLKELYLDDCLTIDAAQIVPALKKLEHLEVLSLAGIQTVSDEFIGDYITARGHNMKELVLKDCRKLTNASIKVIAEHCPGLCALDLMYLDNLTDLSMGYLTNSCRVLHTLKLCRNPFSDEAIAAFLEIAGESLKDLSLNNIKKVGHHTVLSLASHAKNLHTLDLSWCRNLTDNELGLIVDSCFSLRLLKLFGCSLVTDVFLNGHSNPEIQILGVKMSPLLQNVRVPDICEGPLRYSSVSVDLIYK* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00486 663 Gene3D Ribonuclease Inhibitor 250 634 IPR032675 -
Lapu3g00486 663 MobiDBLite consensus disorder prediction 52 70 - -
Lapu3g00486 663 MobiDBLite consensus disorder prediction 36 70 - -
Lapu3g00486 663 MobiDBLite consensus disorder prediction 194 219 - -
Lapu3g00486 663 MobiDBLite consensus disorder prediction 91 122 - -
Lapu3g00486 663 MobiDBLite consensus disorder prediction 201 219 - -
Lapu3g00486 663 PANTHER UNCHARACTERIZED 254 439 - -
Lapu3g00486 663 SMART LRR_CC_2 574 599 IPR006553 -
Lapu3g00486 663 SMART LRR_CC_2 390 415 IPR006553 -
Lapu3g00486 663 SMART LRR_CC_2 548 573 IPR006553 -
Lapu3g00486 663 SMART LRR_CC_2 364 389 IPR006553 -
Lapu3g00486 663 SMART LRR_CC_2 600 633 IPR006553 -
Lapu3g00486 663 SMART LRR_CC_2 470 495 IPR006553 -
Lapu3g00486 663 SMART LRR_CC_2 496 521 IPR006553 -
Lapu3g00486 663 SMART LRR_CC_2 522 546 IPR006553 -
Lapu3g00486 663 MobiDBLite consensus disorder prediction 93 111 - -
Lapu3g00486 663 FunFam RNI-like superfamily protein 246 464 - -
Lapu3g00486 663 SUPERFAMILY RNI-like 308 615 - -
Lapu3g00486 663 FunFam DNA repair protein rhp7 isoform A 550 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00486 Lapu-Chr3 4988730 4992929 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00486 K15082 - gmx:100798274 875.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00486 3 4988730 4992929 Lapu3g00486 3 4988730 4992929 ECH
Lapu3g00486 3 4988730 4992929 Lapu9g00389 9 4130841 4136278 PCT