Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00409 ATGAAGCAAAAAACGCCATCTTCACCAACCACTGCAAGAACTGCGTTGAAGAAGCAAGGTGACAACAACAAGTCCCTGCGGAGTCCACCGCAGCCACGCCTCAGAGCTTCTCCCAAGGCTCCAAAGTCACCACCAGAATCATCAACCAGAGCCAAGTCAGTGCCCCCAGACTTGAAGGACGTGTCAAGGGCCAAAAGGGGTGCTGTTGTGGGGTCTCAAAAGGGTAGGGAAGCCGAGGAGGCTAAGGTTGTTGTTGTTGCTCAACCACGGCGAAGGCTTGGGGATTTTGGTTTGAGGAAGAGTGAAGATGATGACCCTGATGGGAAGAAGAGAAAGGAGTTGCAGGAGAAGCTTGAGGTGAGCGATAGTTTGATCAAGGGTTTGCAATCTGAGGTGCTGGCGTTGAAGGAGGAATTGGATAGACTTAAGAGCTTGAATGTGGAGCTTGAGTCTCAGAACACAAAGCTGACTCGGAACCTTGCTGCTGCTGAAGCTAAGGAAGCAACTGTTGGCATTGGCAACAGTGGAAAGAAGGATTCAATTGGAGAACACCAGAGTCCCAAGTTTAAAGACATACAGAAACTCATTGCTGACAAATTGGAACTGTCTAGAGTAAAAAAGGAAGGTACTCCTGAAGTTATTTTTGCTAAAGCATCAATTCCTTCACCAACCCCGAGTTTTTCAATTCATGAAACTAAAAGTATAGGAAGAAAATCTCCACCCAATACATACCTGCAGCCACCTCCACCACCACTACCACCATCACCAGTTACGACTGTAGGAAGAACTTCTGCACCCAGCACATGCCTGCAGGCCCCTCCGCCACCTCCTCCACCGCCGCCAATTGCATCTCGGCCTTCATCAAGATTAGCTAACACCCAAAAGGCCCCTGCAGTTGTTGAACTATTTCACTCCTTGAAGAATAAAGATGGAAAGATAGACTCAAAAGGACCAGTGAATCATCAGAGACCAGTAGTTATTAGTGCACACAGTAGCATTGTGGGAGAAATTCAAAACCGTTCAGCTCATCTCTTAGCAATAAGGGCAGATATTGAAACAAAAGGAGAGTTCGTTAATGACCTCATAAAGAAAGTAGCAGATGCAGCATTCACGGATATTGAAGAGGTCTTAAAGTTTGTTAATTGGCTTGATGGAAAACTATCATCGTTGGCTGATGAGCGTGCTGTCTTGAAGCATTTTAAGTGGCCTGAGAAGAAAGCTGATGCAATGAGAGAGGCTGCAATTGAGTATCATGAACTTAAAATGTTAGAACAGGAAATTTCCTCCTGCAAGGATGAACCTGACATTCCATGTGCAGCTGCCTTGAAAAAGATGGCCAGCCAATTAGACAAGTCTGAGAGGAGCATACAGAGGCTAATCAAGCTACGAAGTTCAGCCATGCATTCATATCATGTGTACAACATTCCAACTGCGTGGATGCTTGATTCTGGAATAATGAGCAATATAAAGCAGGCTTCCATGACTCTGGTCAAGATGTACATGAAAAGAGTGACAATGGAGATTGAATCCATTCGCAATTCTGACAGAGAATCTATTCAAGATTCTCTTCTGCTCCAGGGTGTGCATTTTGCATACAGGGCTCATCAGTTTGCTGGAGGATTGGACTCAGAAACAATGTGCGCTTTTGAAGAGATACGACAGCGTGTACCAGGACACCTAGCAGGGTCTCGAGAACTTTTGGCTGGCATACCATAA 1716 0.4563 MKQKTPSSPTTARTALKKQGDNNKSLRSPPQPRLRASPKAPKSPPESSTRAKSVPPDLKDVSRAKRGAVVGSQKGREAEEAKVVVVAQPRRRLGDFGLRKSEDDDPDGKKRKELQEKLEVSDSLIKGLQSEVLALKEELDRLKSLNVELESQNTKLTRNLAAAEAKEATVGIGNSGKKDSIGEHQSPKFKDIQKLIADKLELSRVKKEGTPEVIFAKASIPSPTPSFSIHETKSIGRKSPPNTYLQPPPPPLPPSPVTTVGRTSAPSTCLQAPPPPPPPPPIASRPSSRLANTQKAPAVVELFHSLKNKDGKIDSKGPVNHQRPVVISAHSSIVGEIQNRSAHLLAIRADIETKGEFVNDLIKKVADAAFTDIEEVLKFVNWLDGKLSSLADERAVLKHFKWPEKKADAMREAAIEYHELKMLEQEISSCKDEPDIPCAAALKKMASQLDKSERSIQRLIKLRSSAMHSYHVYNIPTAWMLDSGIMSNIKQASMTLVKMYMKRVTMEIESIRNSDRESIQDSLLLQGVHFAYRAHQFAGGLDSETMCAFEEIRQRVPGHLAGSRELLAGIP* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00409 571 Coils Coil 442 462 - -
Lapu3g00409 571 MobiDBLite consensus disorder prediction 269 285 - -
Lapu3g00409 571 MobiDBLite consensus disorder prediction 225 241 - -
Lapu3g00409 571 MobiDBLite consensus disorder prediction 56 86 - -
Lapu3g00409 571 Coils Coil 406 426 - -
Lapu3g00409 571 MobiDBLite consensus disorder prediction 1 115 - -
Lapu3g00409 571 MobiDBLite consensus disorder prediction 225 293 - -
Lapu3g00409 571 MobiDBLite consensus disorder prediction 242 257 - -
Lapu3g00409 571 Coils Coil 111 166 - -
Lapu3g00409 571 MobiDBLite consensus disorder prediction 164 186 - -
Lapu3g00409 571 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 25 558 IPR040265 -
Lapu3g00409 571 MobiDBLite consensus disorder prediction 1 30 - -
Lapu3g00409 571 MobiDBLite consensus disorder prediction 93 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00409 Lapu-Chr3 4134109 4142187 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00409 - - gmx:100820135 864.374
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00409 3 4134109 4142187 Lapu3g00409 3 4134109 4142187 ECH
Lapu3g00409 3 4134109 4142187 Lapu9g00328 9 3373879 3381591 PCT