Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00271 ATGGCCGTCGTAACTAGCAACGGCAAGCGCCGCCAGCAGTGGCTCTCCGCGAATCACCACCTTCCATCTCCCAATTCCAAAAGGCTCAGACTGTCAACAACATCCGAAAACCACGCGCACTCTTTGTTATCCTCGACTAGTATTGTTTCCAGAATTTCCAAATATCCCGAACCCAAGCCACTGATGCGTAGGGAGGTTCACGCCCCGTGTAGACCCCGTAAGTTTGCCTTTCCAACATTTAATAGAATGGAATCGAACTTGAATGCTAGTAGTAGTTACTATGATCGCAAGGACGGTGTGCACAACATGCTGAGTGAAAATTACGAAAGGGCGAAAAAATCCGCGTTAGCTAGCATTAGGTTTGGGGAAAAGGGTAAGGAGGTGATAGAAGTGGATGATGATAGTCCCAAGGGCATGGTTTCCGAAGATTCAGGTGTGGAGGAGGTTCGTTTTAGGGAAGATGGACGGGATGTGCGCTCTGTGGTGGCGGAGCACAAGTGGCAAGAGGGTGATTTGGTTGTGACTGAAGTGAAGGATTTGGAAGCTAAGGATGTGCGTGGTGGCCCTCAGCAGCAGTCAACTTCATCTGTAGTTTCTGAGTTGACTAACAGTGATTTGAATGTTGTTAATGCTGCGAAGATGTTGGACACTCTGTCTTTAACTCCCGAGCGTGACCTTTCGGATGTTCATGCCTATAGGAAGTTGCTTGAGGCTGTTGACAAGCGCTCGGATACGATTAAGAGGCTGTCGGCTGAAATTAAGCTTAATGAGAGGCGTAGGTCCACATTTGAATTGTTGCGCCCGAAGAAGCAGCTAGTAGAGGAAGTGCCATTGGAACCTTTTATTCCTCTTACTAAAGAAGAAGAAGTTGAGGTTGCACGTGCATTTTCTGCCAACAGGAGGAAGATCTTGGTTGCCCACGAGAAATCTTGCATTGAGGTCTCAGGAGAAAAATTTCAATGCCTTAGACCGGGTGCATGGTTAAATGATGAGGTAATAAATTTGTACCTTGAGTTGCTAAAAGAGAGGGAGAGAAGAGAGCCGCAGAAGTTTCTGGACTGTCATTTTTTCAATACCTTTTTCTACAAGAAGTTAATAAGTGGCAAGAGTGGTTATGATTTCAAATCTGTGAGGAGATGGACCAGCCAAAAGAAACTGGGATATGGCCTACATGAATGTGATAAAATATTTGTACCTATCCATAAAGAGATCCATTGGTGCTTGGCGGTTATCAATAAGAAAGACAAGAAATTTCAGTACTTGGACTCACTGAGAGGAATAGATAACCAAGTGATGAAAGTTCTGGCTAGCTATATCGTAGATGAAGTAAAGGACAAGACTGGAAAAGATATTGATGTAAGTTCTTGGGAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGAATGGGTATGACTGTGGGGTGTTTATGATCAAGTACGCTGATTTTTATAGCAGGAACTTGGGTCTGTGTTTCAACCAGGAACACATGCCTTACTTTCGACGCAGAACAGCTAAGGAAATATTGAGATTAAGAGCTAACTAA 1545 0.4427 MAVVTSNGKRRQQWLSANHHLPSPNSKRLRLSTTSENHAHSLLSSTSIVSRISKYPEPKPLMRREVHAPCRPRKFAFPTFNRMESNLNASSSYYDRKDGVHNMLSENYERAKKSALASIRFGEKGKEVIEVDDDSPKGMVSEDSGVEEVRFREDGRDVRSVVAEHKWQEGDLVVTEVKDLEAKDVRGGPQQQSTSSVVSELTNSDLNVVNAAKMLDTLSLTPERDLSDVHAYRKLLEAVDKRSDTIKRLSAEIKLNERRRSTFELLRPKKQLVEEVPLEPFIPLTKEEEVEVARAFSANRRKILVAHEKSCIEVSGEKFQCLRPGAWLNDEVINLYLELLKERERREPQKFLDCHFFNTFFYKKLISGKSGYDFKSVRRWTSQKKLGYGLHECDKIFVPIHKEIHWCLAVINKKDKKFQYLDSLRGIDNQVMKVLASYIVDEVKDKTGKDIDVSSWEKEFVEDLPEQQNGYDCGVFMIKYADFYSRNLGLCFNQEHMPYFRRRTAKEILRLRAN* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00271 514 SUPERFAMILY Cysteine proteinases 280 513 IPR038765 -
Lapu3g00271 514 Gene3D Adenoviral Proteinase; Chain A 272 511 - -
Lapu3g00271 514 MobiDBLite consensus disorder prediction 1 38 - -
Lapu3g00271 514 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 135 507 - -
Lapu3g00271 514 Pfam Ulp1 protease family, C-terminal catalytic domain 327 508 IPR003653 GO:0006508|GO:0008234
Lapu3g00271 514 FunFam Ubiquitin-like-specific protease ESD4 271 512 - -
Lapu3g00271 514 ProSiteProfiles Ubiquitin-like protease family profile. 312 484 IPR003653 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00271 Lapu-Chr3 2795292 2801920 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00271 K08592 - gmx:100797013 816.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00271 3 2795292 2801920 Lapu3g00271 3 2795292 2801920 ECH
Lapu3g00271 3 2795292 2801920 Lapu9g00119 9 1101161 1108063 PCT