Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00260 ATGGATGCAAAGTCTCTCCAAGCTGTTGTTCCCTCAGAGCCATTGATGTATCAGACATGGTTCTTGAAAGTTTCCATCCACTGTCAAGGTTGCAGGAGGAAAGTGAAAAAGGTTTTACAGAGCATTGATGGTGTTTTCACCACAACGGTTGACCCGCAGCAGCAGAAAGTGACTGTCACCGGAAGCGTCGGCGTTGAGACGCTGATAAGGAAACTTGTGAAAGCCGGAAAACACGCCGAGATTTGGCCGGAGAATCTCGCCGCCGGGAAGGGAAAGAACACAGGCAAAGACAAGCAGCAGCAGCAGCAGAAGAAGAAAAATGAACAAGGAGAAGATTCCGAAAGCACGAATAATCACTCCACTACAGCGAATGCAGAACCTAACAGTGTCAGCACCAACTCTAGCAAAAAAAAGGTAAACGAAAAATGTGCTGAGAAAGGCAACGCCGAAAGCAAGAAGGGCGGCGGCGGAGAAAATGAGTCACCGGAAGCGGAGAACAAGGGTGATCAAAGTGTAGGAGACGGGAAGAAAAAGAAAAAGAAAGAGAAAGAGAAGGAGAAAAGTGAGTGTGATGGGAGTTCGGCATGTAACGGTGGAGCTGCGCACAGTGGAACCCCCGGGCAGGTGAATCTGAGCCCTACACGTCAGCAACCGTACCTGTATCCAGAAGCTTACTGTTATCCCCCTCTGGTGTATCTCGCAACTCACAACAGGTTGTGTCCCATGGGAACTATGGGTGGTCCTTCTTACTATGTTTCTCCATTGCCCTACATGTCTGCAGGCATCGACCACGACCCCTATCGCCTTCAATCTACGCCCTTCGTTCCCTTCGAGATCTTCAGCGATGAGAATGCCAATGGCTGTTCTATCATGTGA 876 0.4943 MDAKSLQAVVPSEPLMYQTWFLKVSIHCQGCRRKVKKVLQSIDGVFTTTVDPQQQKVTVTGSVGVETLIRKLVKAGKHAEIWPENLAAGKGKNTGKDKQQQQQKKKNEQGEDSESTNNHSTTANAEPNSVSTNSSKKKVNEKCAEKGNAESKKGGGGENESPEAENKGDQSVGDGKKKKKKEKEKEKSECDGSSACNGGAAHSGTPGQVNLSPTRQQPYLYPEAYCYPPLVYLATHNRLCPMGTMGGPSYYVSPLPYMSAGIDHDPYRLQSTPFVPFEIFSDENANGCSIM* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00260 291 MobiDBLite consensus disorder prediction 97 113 - -
Lapu3g00260 291 CDD HMA 22 80 IPR006121 GO:0046872
Lapu3g00260 291 Pfam Heavy-metal-associated domain 24 78 IPR006121 GO:0046872
Lapu3g00260 291 ProSiteProfiles Heavy-metal-associated domain profile. 17 80 IPR006121 GO:0046872
Lapu3g00260 291 MobiDBLite consensus disorder prediction 138 191 - -
Lapu3g00260 291 MobiDBLite consensus disorder prediction 84 211 - -
Lapu3g00260 291 SUPERFAMILY HMA, heavy metal-associated domain 14 83 IPR036163 GO:0046872
Lapu3g00260 291 MobiDBLite consensus disorder prediction 114 137 - -
Lapu3g00260 291 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 33-RELATED 13 291 - -
Lapu3g00260 291 Gene3D - 17 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00260 Lapu-Chr3 2712601 2713845 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00260 - - gmx:100808829 346.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00260 3 2712601 2713845 Lapu9g00129 9 1158667 1160116 PCT