Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g02192 ATGGCGGTGAAAGAAGTGGAGGAAGGTGTGCAGAAAGGTATCAGAGAGCCACTGGTGGGTCAACCGGATCACCAGCTGGTCCATCCAAGCAAAGGGCATCCATGGATGGTTTATTTTTGTACATTCGTTGCAGTGTGTGGTTCTTATGAATTTGGCGCTTGTGCTGGATATTCATCTCCCACTCAAGATGCTATCAGGAAGGATTTCAGTCTGTCTTTGGCAGAGTACTCCTTGTTTGGCTCCATCTTGACTTTTGGTGCAATGGTTGGCGCAATAACAAGTGGGCCTATTGCTGATTTTATTGGACGAAAAGGGGCAATGAGAGTGTCAAGTGCTTTCTGTGTCGCCGGGTGGCTTGTTATTTACTTTTCTGAGGGTCCAGTGCCTCTGAACATCGGGAGGCTAGCAACAGGATATGGAATGGGAGTTTTTTCATTTGTGGTTCCTATCTTTGTAGCAGAAATAGCGCCGAAGGAACTCCGAGGGACACTGACTACCTTAAATCAGCTCATGATCACTGCTGCTGTGTCAGTGGCATTCACCATTGGAAATGTACTTTCGTGGAGGGCTTTAGCTTTAACTGGCCTCATTCCCACTGCTGTGTTGCTATTGGGTCTGTTTTTCATTCCAGAGTCTCCTAGATGGCTAGCAAAGAGAGGACGTCAAAAAGATTTTGAGGCAGCACTGCAAATACTTCGTGGCAAAGACGCTGATATATCTGAGGAGGCAGAAGAAGTTCAGGATTATATAACTACTTTGGAGCAGCTCCCAAAATCTAGGCTACTGGAATTGTTTCATAGAAGATATTTGCGCTCAGTCACAATAGGAATAGGCCTTATGGTCTGCCAGCAGTTTGGAGGAATCAATGGAATTTGCTTTTATACCAGCAGTATTTTTGAACTAGCAGGATTTTCTCCCACCATCGGAACTATAACATATGCTTGCCTTCAGATTGTCATCACAGGTCTTGGAGCTGCCTTAATCGATAAAGCTGGGAGAAAGCCCCTACTTCTATTATCTGGATCGGGATTGGTCGCAGGATGTATATTTATAGCAGTTGCGTTCTATCTCAAGGTTTACGAGGTGGGTGTTGCAGCTGTCCCAGCACTTGCCGTAACAGGCATACTGGTCTACATAGGATCATTTTCAATAGGAATGGGAGCAATTCCATGGGTTGTGATGTCCGAGATATTTCCTGTCAATATTAAAGGGCTAGCTGGAAGTTTGGCCACATTAACGAACTGGTTTGGTGCATGGTTATGTTCCTATACTTTCAACTTTCTCATGAGCTGGAGTTCCTACGGTACCTTCATTCTTTATGCAGCAATTAATGCATTGGCTATATTATTTATAATTTTTGCGGTGCCAGAAACCAAGGGGAAAAGCTTGGAACAAATACAAGCAGCCATTAACTCTTAA 1419 0.4433 MAVKEVEEGVQKGIREPLVGQPDHQLVHPSKGHPWMVYFCTFVAVCGSYEFGACAGYSSPTQDAIRKDFSLSLAEYSLFGSILTFGAMVGAITSGPIADFIGRKGAMRVSSAFCVAGWLVIYFSEGPVPLNIGRLATGYGMGVFSFVVPIFVAEIAPKELRGTLTTLNQLMITAAVSVAFTIGNVLSWRALALTGLIPTAVLLLGLFFIPESPRWLAKRGRQKDFEAALQILRGKDADISEEAEEVQDYITTLEQLPKSRLLELFHRRYLRSVTIGIGLMVCQQFGGINGICFYTSSIFELAGFSPTIGTITYACLQIVITGLGAALIDKAGRKPLLLLSGSGLVAGCIFIAVAFYLKVYEVGVAAVPALAVTGILVYIGSFSIGMGAIPWVVMSEIFPVNIKGLAGSLATLTNWFGAWLCSYTFNFLMSWSSYGTFILYAAINALAILFIIFAVPETKGKSLEQIQAAINS* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g02192 472 SUPERFAMILY MFS general substrate transporter 29 467 IPR036259 -
Lapu1g02192 472 FunFam sugar transporter ERD6-like 6 31 470 - -
Lapu1g02192 472 ProSiteProfiles Major facilitator superfamily (MFS) profile. 36 459 IPR020846 GO:0022857
Lapu1g02192 472 CDD MFS_GLUT6_8_Class3_like 38 465 IPR044775 GO:0008643|GO:0051119
Lapu1g02192 472 Pfam Sugar (and other) transporter 48 468 IPR005828 GO:0016020|GO:0022857|GO:0055085
Lapu1g02192 472 Gene3D MFS general substrate transporter like domains 31 472 IPR036259 -
Lapu1g02192 472 PRINTS Sugar transporter signature 372 393 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lapu1g02192 472 PRINTS Sugar transporter signature 283 293 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lapu1g02192 472 PRINTS Sugar transporter signature 131 150 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lapu1g02192 472 PRINTS Sugar transporter signature 395 407 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lapu1g02192 472 PANTHER - 32 467 - -
Lapu1g02192 472 NCBIfam sugar porter family MFS transporter 33 466 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lapu1g02192 472 ProSitePatterns Sugar transport proteins signature 1. 324 341 IPR005829 GO:0016020|GO:0022857|GO:0055085
Lapu1g02192 472 ProSitePatterns Sugar transport proteins signature 1. 94 111 IPR005829 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g02192 Lapu-Chr1 36490909 36504267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g02192 1 471 Organic Solute Cotransporters AT5G18840 57.292 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g02192 K03444 - gmx:100819822 838.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g02192 1 36490909 36504267 Lapu6g02113 6 20816162 20820953 ECH
Lapu1g02192 1 36490909 36504267 Lapu1g02192 1 36490909 36504267 ECH