Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01704 ATGGGCACAAAAGTGAGTCTTTTGTTGTGTGTTTGGGTTTTACTGTTGGGGTGTACCGTGGGTAGGTTTGTGGTGGAGAAGAACAGTTTGAGAGTGACTGCTCCAATATCGTTGAAGGGGACATATGAATGTGCAATTGGAAATTTTGGGGTCCCCAAGTATGGAGGAACATTGGTTGGTTCTGTGGTGTACCCAAAGGTGAATCAGAAGGGCTGTTTAAACTTCACTGATGTCAATTTTCAGTCCAAGCCAGGAGAGTTCCCCACTTTTCTTCTTGTGGATCGTGGAGATTGCTACTTCACTTTGAAGGCATGGAATGCACAGAATGGTGGAGCAGCAGCTATTCTTGTAGCTGATGACAAGGCAGAAACATTGATCACTATGGACACTCCTGAAGAAGGGAAAGGTACAAATGATGATTATGTGGAAAATATTAGTATTCCTTCTGCTCTTATCAGCAAATCCTTGGGGGATAGCATCAAGAAAGCTCTCAATGATGGGGACATGGTTAACATGAATCTTGATTGGAGAGAGGCTCTTCCACATCCTGATGACAGAGTTGAGTATGAGTTATGGACAAATAGCAACGACGAGTGTGGGCCAAAGTGTGACAGTTTGATTAATTTTCTGAAGGACTTTAAAGGGGTAGCTCAGCTGCTTGAACAGAAAGGGTTCACTCAGTTTACCCCTCGCTATATAACTTGGTTTTGTCCCGAAGCATTTCTCTTGAGCAAACAGTGTAAGTCTCAGTGCATAAACAATGGAAGGTACTGTGCTCCAGATCCCGAGCAAGATTTCAGTAGAGGGTATGATGGCAAAGACGTTGTTGTTCAAAACTTACGCCAAGCGTGCTTCTATAAAGTGGCAAATGAAAGTGGAAAGCCTTGGCAATGGTGGGACTATGTTAGCGACTTTTCAATTCGTTGCCCCATGAAAGAGAACAAGTACACAGAAGAATGCTCAGATCAAGTTATTAAATCTCTTGGTGCTGATCTGAAGAAGATTAAGGACTGTGTTGGTGATCCCCATGCAGATGCTGAAAATCCTGTTCTTAAGGCTGAGCAGGATGCACAGATTGGCAAAGGGAGTCGTGGTGATGTCACTATACTGCCTACTCTTGTTATAAACAACAGACAGTATAGAGGTAAGTTGTCAAGACCCGCTGTTCTCAAGGCAATCTGTGCAGGTTTCCTAGAGACCACTGAACCATCAGTTTGCTTAACTCCAGAAATGGAAACAAATGAGTGTTTGGTAAACAATGGTGGTTGTTGGAAGGAAAAATCCTCTAACATTACTGCTTGCAGGGACACTTTCCGAGGACGAGTATGTGAATGCCCTGTTGTACAAAATGTAAAATTTGTTGGAGATGGATATACCCACTGTGAAGCATCAGGAACCTTGAGCTGTGACTTCCACAATGGTGGTTGTTGGAAGGGATCTCAAGGTGGCAGGGCTTACACGGCTTGTCTGGATGACTACAGAAAAGGCTGTACATGTCCTCCTGGGTTCAGAGGTGATGGAGTCCAGTCATGTGAAGATATTGATGAGTGCCAAGAGAAAACGGCCTGCCAATGCCCAGGTTGCAAATGCAAAAACACCTGGGGAAGTTATGAGTGCAAATGCGGTGGTGGTTTGTTCTATTCACGAGAAAATGACACATGTCTAGGTGCATATTCTGCTTCAGGGGTGAGCATCTGGATGATTATTCTCATTGCGGTAGTTGCTGTTTCTGGAGGATATGCATTTTACAAGTACAGAATCCAGATAAATTATATGCAGAGATATATGGATTCAGAAATACGAGCTATTATGGCACAATACATGCCTTTGGATAATCAACCTGAGGTCTCTAATCAAGTTCATCACAATATCTAG 1875 0.4336 MGTKVSLLLCVWVLLLGCTVGRFVVEKNSLRVTAPISLKGTYECAIGNFGVPKYGGTLVGSVVYPKVNQKGCLNFTDVNFQSKPGEFPTFLLVDRGDCYFTLKAWNAQNGGAAAILVADDKAETLITMDTPEEGKGTNDDYVENISIPSALISKSLGDSIKKALNDGDMVNMNLDWREALPHPDDRVEYELWTNSNDECGPKCDSLINFLKDFKGVAQLLEQKGFTQFTPRYITWFCPEAFLLSKQCKSQCINNGRYCAPDPEQDFSRGYDGKDVVVQNLRQACFYKVANESGKPWQWWDYVSDFSIRCPMKENKYTEECSDQVIKSLGADLKKIKDCVGDPHADAENPVLKAEQDAQIGKGSRGDVTILPTLVINNRQYRGKLSRPAVLKAICAGFLETTEPSVCLTPEMETNECLVNNGGCWKEKSSNITACRDTFRGRVCECPVVQNVKFVGDGYTHCEASGTLSCDFHNGGCWKGSQGGRAYTACLDDYRKGCTCPPGFRGDGVQSCEDIDECQEKTACQCPGCKCKNTWGSYECKCGGGLFYSRENDTCLGAYSASGVSIWMIILIAVVAVSGGYAFYKYRIQINYMQRYMDSEIRAIMAQYMPLDNQPEVSNQVHHNI* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01704 624 PANTHER PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 8 614 - -
Lapu1g01704 624 Pfam Complement Clr-like EGF-like 497 516 IPR026823 -
Lapu1g01704 624 Pfam PA domain 60 160 IPR003137 -
Lapu1g01704 624 SMART egfca_6 513 555 IPR001881 GO:0005509
Lapu1g01704 624 FunFam vacuolar-sorting receptor 1 406 462 - -
Lapu1g01704 624 ProSitePatterns Calcium-binding EGF-like domain signature. 513 539 IPR018097 GO:0005509
Lapu1g01704 624 Gene3D Laminin 460 555 - -
Lapu1g01704 624 SUPERFAMILY EGF/Laminin 510 555 - -
Lapu1g01704 624 CDD EGF_CA 513 544 - -
Lapu1g01704 624 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Lapu1g01704 624 FunFam Vacuolar-sorting receptor 1 20 183 - -
Lapu1g01704 624 Gene3D - 20 183 - -
Lapu1g01704 624 Gene3D Laminin 407 452 - -
Lapu1g01704 624 SUPERFAMILY PA domain 90 171 IPR046450 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01704 Lapu-Chr1 29965437 29971158 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01704 4 624 Miscellaneous Gene Families AT3G52850 69.268 0.0 913
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01704 - - gmx:100807514 1201.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01704 1 29965437 29971158 Lapu1g01704 1 29965437 29971158 ECH
Lapu1g01704 1 29965437 29971158 Lapu10g00758 10 9389816 9395234 PCT