Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01648 ATGGCCACACTCAAGACCCTTTGTTTCAGAGCAACCACCTTCCCCGTTTGCCCCTCCAATGTCACCAATAATAAAAACGCCAGGAGCTCAAACTGGAAGCCTCCACAAGCAGCTGTCAAACCTAGTTTGCACCTTCCAATGCGCAGCTTTGAGTTGAAAAATAGGACTTCCGCAGAGGACATAAAGTGTCTGAGGTTGATAACTGCCATCAAAACTCCATACCTACCTGATGGTCGATTTGATCTTGAAGCATATGATGACTTGGTGAATATGCAGATTGGACAAGGGGTTGAAGGTGTTATTGTTGGTGGGACGACTGGTGAAGGCCAATTAATGAGCTGGGAGGAGCACATAATGCTCATTGCTCATACAGTCAACTGTTTTGGTGGGAAAATTAAGGTTATTGGAAATACTGGAAGCAACTCCACCAGGGAAGCAATTCATGCCACCGAGCAGGGATTTGCTGTTGGAATGCATGCTGCCCTACACATAAACCCTTACTATGGAAAAACATCCTTGGATGGCATGGTTGCTCACTTTCAAAGCGTGCTTTCGATGGGACCCACAATAATCTATAATGTGCCTTCACGGACTGGTCAGGACATTCCTCCACATGTAATTCAAACCTTAGCTGAAAGTGCTAACTTGGCTGGTGTCAAGGAGTGTGTGGGAAATGATCGGATCAAGCTGTATACAGACGATGAAATTGTTGTGTGGAGTGGGAATGATGATCAATGCCATGATGCTAGATGGGGTTATGGAGCTACTGGAGTGATATCTGTTGCAAGCAACCTGGTTCCTGGTTTAATGCGGGAACTCATGTTTGGTGGTGTAAATCCTACGATAAATTCTAAGCTCTTACCTCTGATTGACTGGCTTTTCCACATGCCAAACCCCATTGGGTTGAACACTGCTCTTGCTCAACTTGGGGTAGTCAGGCCCGTTTTTAGGCTACCATTTGTACCGCTCCCCGTGGAGAAAAGGATAGAATTTGCCAATATAGTGAAGGCAATTGGCCGAGAGCATTTTGTTGGAAATAAAGATGTTGAGGTTCTTGATGACGAAGACTTTTTCTTGGTCAGTCGTTATTGA 1092 0.4515 MATLKTLCFRATTFPVCPSNVTNNKNARSSNWKPPQAAVKPSLHLPMRSFELKNRTSAEDIKCLRLITAIKTPYLPDGRFDLEAYDDLVNMQIGQGVEGVIVGGTTGEGQLMSWEEHIMLIAHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLDGMVAHFQSVLSMGPTIIYNVPSRTGQDIPPHVIQTLAESANLAGVKECVGNDRIKLYTDDEIVVWSGNDDQCHDARWGYGATGVISVASNLVPGLMRELMFGGVNPTINSKLLPLIDWLFHMPNPIGLNTALAQLGVVRPVFRLPFVPLPVEKRIEFANIVKAIGREHFVGNKDVEVLDDEDFFLVSRY* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01648 363 NCBIfam 4-hydroxy-tetrahydrodipicolinate synthase 66 336 IPR005263 GO:0008840|GO:0009089
Lapu1g01648 363 SUPERFAMILY Aldolase 66 338 - -
Lapu1g01648 363 ProSitePatterns Dihydrodipicolinate synthase signature 1. 99 116 IPR020624 GO:0016829
Lapu1g01648 363 Gene3D Aldolase class I 57 363 IPR013785 -
Lapu1g01648 363 PRINTS Dihydrodipicolinate synthase signature 164 180 IPR002220 GO:0016829
Lapu1g01648 363 PRINTS Dihydrodipicolinate synthase signature 132 150 IPR002220 GO:0016829
Lapu1g01648 363 PRINTS Dihydrodipicolinate synthase signature 96 117 IPR002220 GO:0016829
Lapu1g01648 363 PRINTS Dihydrodipicolinate synthase signature 187 204 IPR002220 GO:0016829
Lapu1g01648 363 CDD DHDPS 65 335 IPR005263 GO:0008840|GO:0009089
Lapu1g01648 363 Hamap 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 62 337 IPR005263 GO:0008840|GO:0009089
Lapu1g01648 363 PANTHER DIHYDRODIPICOLINATE SYNTHASE 50 348 IPR002220 GO:0016829
Lapu1g01648 363 ProSitePatterns Dihydrodipicolinate synthase signature 2. 192 222 IPR020625 GO:0016829
Lapu1g01648 363 SMART DHDPS_2 62 339 IPR002220 GO:0016829
Lapu1g01648 363 Pfam Dihydrodipicolinate synthetase family 64 337 IPR002220 GO:0016829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01648 Lapu-Chr1 29339242 29342968 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01648 K01714 - gmx:100788930 674.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01648 1 29339242 29342968 Lapu1g01648 1 29339242 29342968 ECH
Lapu1g01648 1 29339242 29342968 Lapu10g01530 10 26437926 26440203 PCT