Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01544 ATGTCAGAAATTGACATGGCGGTTATTAAACCTGAGATGATGAAGCCTTATATCTGGCTTGAGACATCAGATGGTTCAATTCAACAAGTGGAACAAGAAATTGCAATGTATTGCCCTTTGATTTGTAAAGAAATAATACAAAAAGGGTTGGGATCTTCCAAGAATTGTGCAATATGTCTTCCTCAACGAGTCAGTCCCGCAACATTGAGCTTAGTTCTTGATTATTGTCGTTTTCATCAAGTACCAGGTCGCTCAAACAAGGAAAGGAAGTCTTATGATGAGAAATTTGTTAGAATGGACACAAAGCGCCTCTGTGAGTTGACATCTGCTGCAGACAGCCTTCAGTTGAAGCCATTGGTTGATCTTACAAGTCGTGCACTCGCACGGATAATTGAAGGAAAATCTCCAGAGGAGATACGGGAAATATTTCATCTTCCTGACGATCTAACTGAGGAAGAGAAGTTGGAGCCCTTGAAAAACACAACTGACGACCCAAGGATCAGGCTTTTGAATAGATTGTATGCCAAGAAGAGGAAAGAACTAAAAGAGCGTGAGAGGTTGAAGAGTGTTGAAGTTGAAGAAGAGCATGTAGATAAACGTTCAGTTGATGACCTTTTGTCTTTTATTAATGGAAATGACGAAGATCCAAAGGGCACTAAAACTTCTAAGAATAAAAAGAAAAATAGAAGGAAAAAAGAGCAACATCAGAAGAACTCTTCTCTGAAGGAAGCTTCTGAAGTGGATGAGAAGGAAGTAAATGGTCAAAACGTCAGACACCCAAATTCTGAAGTTGATGTAATTGCTGAGACTTCAATTTCTCATACAGAAGATGTTTTTGCTCATAAGGAGTTTGATGATGGAGATATAGATGATGGGATTGATCCTGTGCTTAAGGAAAAAATTGACAGGGAAGTCGAAGATTTTGCCCGCCGTTTAAATTCTGACTGGCCAGAGAGGATGCAAGAACTTTTATCATCTGGACAAGAAAGGAAGACAATGCTTTTTAGTCCCAATGGAAATAGTTTTCTACGGCGAAAGGCTTAA 1044 0.3927 MSEIDMAVIKPEMMKPYIWLETSDGSIQQVEQEIAMYCPLICKEIIQKGLGSSKNCAICLPQRVSPATLSLVLDYCRFHQVPGRSNKERKSYDEKFVRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKSPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKERERLKSVEVEEEHVDKRSVDDLLSFINGNDEDPKGTKTSKNKKKNRRKKEQHQKNSSLKEASEVDEKEVNGQNVRHPNSEVDVIAETSISHTEDVFAHKEFDDGDIDDGIDPVLKEKIDREVEDFARRLNSDWPERMQELLSSGQERKTMLFSPNGNSFLRRKA* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01544 347 Pfam Skp1 family, dimerisation domain 117 154 IPR016072 GO:0006511
Lapu1g01544 347 MobiDBLite consensus disorder prediction 207 263 - -
Lapu1g01544 347 SMART skp1_3 15 116 IPR001232 GO:0006511
Lapu1g01544 347 Pfam Skp1 family, tetramerisation domain 17 80 IPR016073 GO:0006511
Lapu1g01544 347 SUPERFAMILY POZ domain 16 80 IPR011333 -
Lapu1g01544 347 Coils Coil 224 244 - -
Lapu1g01544 347 MobiDBLite consensus disorder prediction 236 256 - -
Lapu1g01544 347 Gene3D Potassium Channel Kv1.1; Chain A 12 162 IPR011333 -
Lapu1g01544 347 SUPERFAMILY Skp1 dimerisation domain-like 90 160 IPR036296 GO:0006511
Lapu1g01544 347 PANTHER SKP1 14 155 IPR016897 GO:0006511
Lapu1g01544 347 FunFam SKP1-like protein 21 isoform X1 12 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01544 Lapu-Chr1 28232738 28240951 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01544 - - gmx:100809439 608.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01544 1 28232738 28240951 Lapu1g01544 1 28232738 28240951 ECH
Lapu10g00127 10 2973066 2983906 Lapu1g01544 1 28232738 28240951 ECH
Lapu1g01544 1 28232738 28240951 Lapu10g00127 10 2973066 2983906 PCT