Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00127 ATGATGATGAAGCCTTATGTCTGGCTTCAGACTTCAGATGATTCAATCCAGCAAGTGGAACAAGAAATTGCAATGTTTTGTCCCCTTATATGTCAAGAAATAATACAAAAAGGCATGGGATCTTCCAAGAATTGTGCAATATGTCTTCCTCAACAAGTCAGTCCTGCCATGTTGAGCTTAATTCTTGATTATTGTCGTTTTCATCAAGTACCAGGCCGGTCGAACAAGGAACGTAAATCTTATGATGAGAAATTCGTTAGGATAGACACAGAGAGGCTTTGTGAGTTGACATCTGCTGCAGACAGCCTTCAGTTAAAACCATTAGTTGATCTTACCAGCCGTGCACTTGCCCGAATAATTGAAGGGAAGACTCCAGAGGAGATACGTGATATATTTCATTTGCCTGATGATCTTACAGAGGAAGAAAAGTTAGAGCCATTGAGAAATATAACTGCCGACCCAAGGATCAGGCTTTTGAACCGTTTGTATGCCAAAAAGAGAAAAGAACTAAAAGAGCGCGAAAGGTTAAAGAATGTTGAAGTTGAAGAAGAACATGTGGATGATCGTTCAGTGGATGACTTATTGTCTTTTATTAATGGAAATGATGGAGATCCAAAGGGAGTTAAAACTCCAAAGAATAAGAAGAAGAACCGGAGAAAAAAAGAGCAACAGAAGAACTCTTCCTTGAAGGAGGCATCTAGACTGAACAAGGAGGTAAATGGTCATGATATCAGACACCAAAGTTCTGAAGCTGAGAGAATTAGTGAGACATCCTATTTACACTATGCAGAAGATGATGCTTTTACTCCTAAGCCCGAGTTTGATGATGGTGATATAGACGATGAGATTGATCCTGCTTTAAAGGAAAAAATTGACAGGGAAGTGGAAGATTTTGCCCGAAGATTAAATTCTGACTGGCCAGAAAGAATGCAAGAACTTTTATCTTCAGGGCAAGAACAGAATACGATGCTTTTAACTGATGGTTTTATAAGGCGACACGCTTGTATGTTTTCACCCTTGTTACAGTATATTCTCTTATCCACCATATTTTGA 1053 0.3903 MMMKPYVWLQTSDDSIQQVEQEIAMFCPLICQEIIQKGMGSSKNCAICLPQQVSPAMLSLILDYCRFHQVPGRSNKERKSYDEKFVRIDTERLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRDIFHLPDDLTEEEKLEPLRNITADPRIRLLNRLYAKKRKELKERERLKNVEVEEEHVDDRSVDDLLSFINGNDGDPKGVKTPKNKKKNRRKKEQQKNSSLKEASRLNKEVNGHDIRHQSSEAERISETSYLHYAEDDAFTPKPEFDDGDIDDEIDPALKEKIDREVEDFARRLNSDWPERMQELLSSGQEQNTMLLTDGFIRRHACMFSPLLQYILLSTIF* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00127 350 SUPERFAMILY Skp1 dimerisation domain-like 79 148 IPR036296 GO:0006511
Lapu10g00127 350 Coils Coil 212 238 - -
Lapu10g00127 350 FunFam SKP1-like protein 21 isoform X1 1 151 - -
Lapu10g00127 350 Gene3D Potassium Channel Kv1.1; Chain A 2 150 IPR011333 -
Lapu10g00127 350 Pfam Skp1 family, tetramerisation domain 7 69 IPR016073 GO:0006511
Lapu10g00127 350 SUPERFAMILY POZ domain 5 69 IPR011333 -
Lapu10g00127 350 MobiDBLite consensus disorder prediction 224 253 - -
Lapu10g00127 350 Pfam Skp1 family, dimerisation domain 106 143 IPR016072 GO:0006511
Lapu10g00127 350 PANTHER SKP1 3 144 IPR016897 GO:0006511
Lapu10g00127 350 MobiDBLite consensus disorder prediction 194 253 - -
Lapu10g00127 350 Coils Coil 159 179 - -
Lapu10g00127 350 SMART skp1_3 4 105 IPR001232 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00127 Lapu-Chr10 2973066 2983906 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00127 - - gmx:100794666 588.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00127 10 2973066 2983906 Lapu10g00127 10 2973066 2983906 ECH
Lapu10g00127 10 2973066 2983906 Lapu1g01544 1 28232738 28240951 ECH
Lapu1g01544 1 28232738 28240951 Lapu10g00127 10 2973066 2983906 PCT