Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00176 ATGGGAGATTCTTACATTATCTTGCAGACAACACAAGGCAAAGGAGGGGCTTATTTGTATGATATTCACTTCTGGATTGGAAAGGATACAAGTCAGGATGAGGCTGGAACAGCAGCCATAAAAACTGTTGAACTTGATGCGTCTCTTGGAGGACGTGCAGTGCAACACAGGGAAATTCAAGGGCATGAATCTGACAAGTTTTTGTCTTACTTCAAGCCATGTATAATACCATTAGAGGGTGGTATCGCATCTGGGTTTAAAAAACCTGAAGAAGAAGAGTTTGAAACACGCTTGTATGTATGCAGAGGAAAACGAGTTGTCAGAATAAAGCAGGTCCCTTTCGCACGGTCTTCGCTGAATCATGATGATGTGTTCATCCTAGATACTCAGAATAAGATTTATCAATTCAATGGTGCTAACTCCAATATCCAGGAAAGAGCCAAGGCTCTGGAAGTTATTCAGTTGTTGAAGGAAAAGTATCATGAAGGCAAATGCGATGTTGCAATTGTTGATGATGGCAAGCTGGATACTGAGTCAGACTCAGGTGAATTTTGGGTTCTCTTTGGTGGTTTTGCTCCCATTGGGAAGAAGGTAATTGGAGAGGATGATATTGTTCCAGAGACCATTCCTGCTCAACTTTATAGTATTGCTGATGGTGAGGTCAAGCCTGTAGAAGGTGAACTTTCAAAATCACTGTTGGAGAACTACAAATGCTATCTGTTGGACTGTGGAGCTGAGGTATTTGTCTGGGTTGGCCGGGTAACACAAGTTGAAGAAAGAAAAGCAGCATGTCAAGCAGCTGAGGAGTTTGTTGCAAGTCAAAAAAGGCCAAAATCTACAAGGATTACCAGAATTATTCAAGGTTATGAAACACATTCATTTAAGTCCAACTTTGATTCTTGGCCATCAGGCTCTGCTACTACCAGTGCTGATGAAGGAAGAGGAAAAGTTGCAGCTTTACTGAAGCAACAAGGTATGGGTGTGAAAGGTGCGGCAAAAAGTACCCCAGTTGTTGAGGAAATTCCACCTTTGCTTGAAGGAGGTGGAAAGATGGAGGTATGGCAAATCAATGGAAGTGCTAAGACTCCATTACCTAAGGAGGATATTGGTAAATTCTATAGTGGAGATTGTTACATAGTACTGTACACTTATCACTCTAGCGAGAGGAAGGAAGACTACTACTTGTGCAGTTGGTTGGGAAAAGACAGTATTGAGGAGGACCAAAAGATGGCTATTCGATTGGCTAATACAATGTTCAACTCATTAAAGGGTAGACCTGTTCAGGGTCGCATATTTGACGGTAAAGAGCCACCACAGTTTATTGCTCTTTTCCAACCAATGGTGGTCCTCAAGGGAGGCTTGAGCTCTGGTTACAAAAAATTTATAGCAGATAAAGGCTTGCCAGATGAGACATACACAGCAGACAGTGTTGCACTTATTCGAATTTCAGGAACATCCAGTCATAACAATAAAGTTGTGCAAGTAGATGCAATTGCGGCATCGTTGAATTCTACCGAATGTTTTGTTTTGCAATCTGGCTCGGCTGTTTTTACTTGGCATGGGAATCAATGTTCCCTTGAGCAGCAGCAGCTTGCAACAAAAGTTGCTGAATTTTTAAAGCCAGGAGTTGCTCTAAAGCTTGCTAAAGAAGGAACAGAAACCTCAACTTTCTGGTTTGCAGTTGGGGGGAAACAAAGTTACACCAGCAAAAAAGCCACTAATGACATTGTCCGAGACGCACATTTGTTCACTTTCTCTTTCAATAGAGGTAGAATATTTTCAAACATTGTAGAGGAGGTTTATAACTTTTCCCAAGATGATTTGTTAACAGAGGATATTCTCATACTTGACACGCATGCCGAAGTTTTCATTTGGATTGGTCAGTGTGTGGATCCAAAAGAAAAGCAAAATGCTTTTGAAATTGCCCAGAAATACATAGATAAGGCTGCCTCTCTGGATGGACTATCTCCTCAAGTTCCACTATATAAAATAACAGAAGGGAATGAACCGTGCTTTTTCACTACATACTTTTCTTGGGATAATGCAAAAGCTGTGGTTCCAGGGAACTCATTCCAGAAAAAGGTGACATTACTCTTTGGGATTGGCCATGCTGTAGAGGAAAAGTCAAATGGGTCAAGTCAAGGGGGACCAAGACAGAGAGCAGAAGCTTTGGCTGCCTTAAATAGTGCATTTAAGTCATCTCCTGAGGCAGCAGCTAGTGCGGATAAGTTAAATGGGCTAAATCAAGGAGGGCCAAGACAAAGGGCTGAAGCCTTAGCAGCCTTAAACTCTGCATTTAATTCATCATCTGGAGCCAAACTTTATACAGCTAGGTCTTCTGGAAGAAGTCAGGGATCACAGAGAGCAGCAGCAGTAGCTGCTCTTTCTTCAGTTCTTACTGCTGAAAAGAAGAAAACTTCACCCGAAACTTCTCCTGTGGCAAGCACTAGTCCTGTTGTGGAAAATAGCAACTTTGGTGAGAAACATAGCTCAATTCCAGATACTAAAAGTGAGAGTGCTCCTTCTGAAACGGTTGTTGTTGAAGAAGTTGTTCCTGAAGTCAAGGAGACAGAAGAATTTGCCCCTGAAACTGGCACAAATGGGGATTCAGAACCAAAACAAGAAAATGTTGAGAATGGAGGAAATGACAGTGAAAATAATCAAAATGTCTTCAGTTATGAGCAACTAAAAACAAAATCTGGTAGTGTTGTATCTGGAATTGATCTTAAACGGAGAGAGGCCTATCTGTCAGACAAGGAGTTCGACACTGTGTTTGGAATGAGCAAAGAGGCATTCACTAAGTTGCCAAGATGGAAGCAAGACATGCTGAAAAGGAAAGTGGATCTGTTCTAG 2853 0.4168 MGDSYIILQTTQGKGGAYLYDIHFWIGKDTSQDEAGTAAIKTVELDASLGGRAVQHREIQGHESDKFLSYFKPCIIPLEGGIASGFKKPEEEEFETRLYVCRGKRVVRIKQVPFARSSLNHDDVFILDTQNKIYQFNGANSNIQERAKALEVIQLLKEKYHEGKCDVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKVIGEDDIVPETIPAQLYSIADGEVKPVEGELSKSLLENYKCYLLDCGAEVFVWVGRVTQVEERKAACQAAEEFVASQKRPKSTRITRIIQGYETHSFKSNFDSWPSGSATTSADEGRGKVAALLKQQGMGVKGAAKSTPVVEEIPPLLEGGGKMEVWQINGSAKTPLPKEDIGKFYSGDCYIVLYTYHSSERKEDYYLCSWLGKDSIEEDQKMAIRLANTMFNSLKGRPVQGRIFDGKEPPQFIALFQPMVVLKGGLSSGYKKFIADKGLPDETYTADSVALIRISGTSSHNNKVVQVDAIAASLNSTECFVLQSGSAVFTWHGNQCSLEQQQLATKVAEFLKPGVALKLAKEGTETSTFWFAVGGKQSYTSKKATNDIVRDAHLFTFSFNRGRIFSNIVEEVYNFSQDDLLTEDILILDTHAEVFIWIGQCVDPKEKQNAFEIAQKYIDKAASLDGLSPQVPLYKITEGNEPCFFTTYFSWDNAKAVVPGNSFQKKVTLLFGIGHAVEEKSNGSSQGGPRQRAEALAALNSAFKSSPEAAASADKLNGLNQGGPRQRAEALAALNSAFNSSSGAKLYTARSSGRSQGSQRAAAVAALSSVLTAEKKKTSPETSPVASTSPVVENSNFGEKHSSIPDTKSESAPSETVVVEEVVPEVKETEEFAPETGTNGDSEPKQENVENGGNDSENNQNVFSYEQLKTKSGSVVSGIDLKRREAYLSDKEFDTVFGMSKEAFTKLPRWKQDMLKRKVDLF* 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00176 950 FunFam Villin-4 205 311 - -
Lapu1g00176 950 CDD gelsolin_S2_like 96 189 - -
Lapu1g00176 950 SUPERFAMILY Actin depolymerizing proteins 553 678 - -
Lapu1g00176 950 ProSiteProfiles Headpiece (HP) domain profile. 885 950 IPR003128 GO:0003779|GO:0007010
Lapu1g00176 950 Gene3D Severin 476 570 IPR029006 -
Lapu1g00176 950 MobiDBLite consensus disorder prediction 800 842 - -
Lapu1g00176 950 MobiDBLite consensus disorder prediction 863 888 - -
Lapu1g00176 950 SUPERFAMILY Actin depolymerizing proteins 467 571 - -
Lapu1g00176 950 SMART VILL_6 475 564 IPR007122 GO:0051015
Lapu1g00176 950 SMART VILL_6 349 447 IPR007122 GO:0051015
Lapu1g00176 950 SMART VILL_6 585 679 IPR007122 GO:0051015
Lapu1g00176 950 SMART VILL_6 96 191 IPR007122 GO:0051015
Lapu1g00176 950 SMART VILL_6 208 301 IPR007122 GO:0051015
Lapu1g00176 950 SMART VILL_6 2 74 IPR007122 GO:0051015
Lapu1g00176 950 Gene3D Severin 205 315 IPR029006 -
Lapu1g00176 950 Pfam Villin headpiece domain 915 950 IPR003128 GO:0003779|GO:0007010
Lapu1g00176 950 SMART VHP_1 915 950 IPR003128 GO:0003779|GO:0007010
Lapu1g00176 950 SUPERFAMILY VHP, Villin headpiece domain 878 950 IPR036886 GO:0003779|GO:0007010
Lapu1g00176 950 SUPERFAMILY Actin depolymerizing proteins 86 194 - -
Lapu1g00176 950 CDD gelsolin_S6_like 581 680 - -
Lapu1g00176 950 PRINTS Gelsolin family signature 394 412 IPR007122 GO:0051015
Lapu1g00176 950 PRINTS Gelsolin family signature 490 510 IPR007122 GO:0051015
Lapu1g00176 950 PRINTS Gelsolin family signature 368 384 IPR007122 GO:0051015
Lapu1g00176 950 PRINTS Gelsolin family signature 550 569 IPR007122 GO:0051015
Lapu1g00176 950 PRINTS Gelsolin family signature 605 627 IPR007122 GO:0051015
Lapu1g00176 950 PRINTS Gelsolin family signature 427 447 IPR007122 GO:0051015
Lapu1g00176 950 PRINTS Gelsolin family signature 280 301 IPR007122 GO:0051015
Lapu1g00176 950 PRINTS Gelsolin family signature 634 653 IPR007122 GO:0051015
Lapu1g00176 950 FunFam Villin-4 342 477 - -
Lapu1g00176 950 SUPERFAMILY Actin depolymerizing proteins 180 302 - -
Lapu1g00176 950 CDD gelsolin_S3_like 211 300 - -
Lapu1g00176 950 SUPERFAMILY Actin depolymerizing proteins 2 104 - -
Lapu1g00176 950 FunFam Gelsolin 478 570 - -
Lapu1g00176 950 Gene3D Villin headpiece domain 873 950 IPR036886 GO:0003779|GO:0007010
Lapu1g00176 950 PANTHER VILLIN 1 940 IPR007122 GO:0051015
Lapu1g00176 950 Pfam Gelsolin repeat 221 294 IPR007123 -
Lapu1g00176 950 Pfam Gelsolin repeat 362 441 IPR007123 -
Lapu1g00176 950 Pfam Gelsolin repeat 2 68 IPR007123 -
Lapu1g00176 950 Pfam Gelsolin repeat 596 673 IPR007123 -
Lapu1g00176 950 Pfam Gelsolin repeat 107 174 IPR007123 -
Lapu1g00176 950 Pfam Gelsolin repeat 489 540 IPR007123 -
Lapu1g00176 950 CDD gelsolin_S1_like 2 81 - -
Lapu1g00176 950 MobiDBLite consensus disorder prediction 800 888 - -
Lapu1g00176 950 Gene3D Severin 1 98 IPR029006 -
Lapu1g00176 950 Gene3D Severin 346 474 IPR029006 -
Lapu1g00176 950 CDD gelsolin_S5_like 475 566 - -
Lapu1g00176 950 Gene3D Severin 574 691 IPR029006 -
Lapu1g00176 950 FunFam Villin-like 1 88 204 - -
Lapu1g00176 950 Gene3D Severin 99 193 IPR029006 -
Lapu1g00176 950 SUPERFAMILY Actin depolymerizing proteins 339 486 - -
Lapu1g00176 950 CDD gelsolin_S4_like 343 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00176 Lapu-Chr1 7562699 7575448 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00176 - - pvu:PHAVU_001G131700g 1767.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00176 1 7562699 7575448 Lapu7g00294 7 3546538 3561841 PCT