Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00109 ATGCAGAGGCCTCCACCAGAAGATTTTCTGTTGAAGGAGACCAAGCCCCACCTTGGAGGGGGTAAGGTCTCCGGTGACAAGCTTACTAGCACTTATGACCTTGTTGAGCAAATGCAGTACCTCTATGTGAGGGTTGTGAAGGCTAAGGACTTACCTGCAAAGGATGTCACTGGTAGTTGTGACCCTTATACTGAAGTCAAGTTGGGGAACTACAAAGGCACCACTCGGCACTTCGAGAAGAAGAGTAATCCTGAATGGAACCAGGTTTTTGCTTTCTCCAAAGACCGTATTCAGGCTTCCATTCTGGAGGTCACTGTGAAGGATAAGGATGTTGTGAGGGATGATTTCATCGGTCGGGTCTTGTTCGACCTCAATGAGATCCCAAAGCGTGTTCCACCTGATAGTCCTCTTGCACCGCAGTGGTATAGGCTGGAGGATAGGAAGGGTGATAAGGCGAAGGGGGAGCTAATGCTGGCTGTTTGGATGGGCACACAAGCTGATGAGGCATTTCCCGAAGCATGGCACTCGGATGCTGCGACTGTTAGTGGGACTGATGCTCTTGCCAACATTAGATCAAAGGTGTATCTATCTCCTAAGCTTTGGTATTTGAGGGTTAATGTGATAGAGGCGCAAGACTTGCAGCCGTCTGACAAGGGTAGATACCCCGAAGTTTTTGTGAAGGCTGCTCTGGGAAATCAGACATTGAGGACTAGAATCTCTCAAAGCAGGACTATCAATCCAATGTGGAATGAGGATATGATGTTTGTGGCTGCTGAACCATTTGAGGAGCCTCTGATTTTGAGTGTGGAAGACAGGGTTGCCCCTAACAAAGAGGAATCCCTTGGGAGGTGTGCAATTCCTTTACAAATGGTGGACCGGAGGCTGGATCACAAACCTGTGAATACTAAGTGGTATAATATTGAAAAACACGTTGTTATTATGGAAGGAGAAAAGAAGAAGGAAATCAAGTTTTCAAGCAAGATTCATATGAGGATCTGTCTGGAAGGTGGTTATCATGTTTTGGACGAATCAACTCACTACAGCAGTGATCTTCGCCCAACTGCGAAACAGCTGTGGAAGTCCAGTATTGGTGTTCTTGAATTGGGGATATTGAATGCTCAGGGTTTGATGCCAATGAAAACAAAAGATGGTAAGGGAACAACAGATGCCTACTGTGTAGCAAAATATGGGCAGAAGTGGGTGCGGACAAGGACAATCATTGATAGCTTTGCACCCCGGTGGAATGAGCAATATACTTGGGAGGTTTTTGATCCTTGCACTGTCATTACAATTGGTGTCTTTGATAACTGTCATTTGCATGGTGGTGATAAGCCTGGTGGAGGGGCAAAAGATTCCAAAATTGGGAAGGTAAGAATCCGTCTTTCCACCCTTGAGACTGACCGTGTCTATACACATTCCTATCCTCTTCTAGTTCTTCATCCGAATGGGGTGAAGAAAATGGGTGAAATCCACTTGGCTGTAAGGTTTACTTGTTCTTCTTTGCTTAATATGATGCACATGTATTCACTGCCCTTACTGCCTAAGATGCACTATATTCACCCACTAACTGTGAGCCAGCTTGACAATTTGAGGCATCAAGCCACTCAGATTGTTTCAATGAGACTGAATCGTGCCGAGCCTCCGTTGAGAAAGGAGATAGTGGAATATATGCTGGATGTGGGTTCCCACATGTGGAGCATGAGAAGAAGCAAGGCTAACTTTTTCAGGATTATGGGGGTTTTGAGTGGACTAATTGCTGTAGGAAAATGGTTTGACCAAATCTGCAATTGGAAAAATCCAATCACAACTGTTCTGATTCATATCCTGTTCATAATATTGGTCATGTACCCTGAGCTTATCTTACCTACAATATTCCTTTACCTCTTCTTGATTGGAGTATGGTACTATAGATGGAGGCCTAGACACCCTCCTCACATGGACACTCGACTCTCTCATGCAGATTCTGCTCACCCGGATGAACTGGATGAAGAGTTTGACACATTCCCAACCACCAGACATTCGGACATCGTGAGGATGAGATATGACCGGCTTAGAAGCATTGCTGGGAGGATACAGACAGTGGTTGGTGATTTGGCCACTCAAGGGGAGAGGCTACAGTCTTTGCTCAGCTGGAGGGATCCAAGAGCAACTGCTCTCTTTGTGATTTTCTGTCTGGTTGCTGCCATTGTACTCTATGTCACTCCATTCCAGGTTGTGGCACTTCTAACTGGAATCTATGTATTGAGACACCCCAGGTTCCGCCACAAGCTTCCTTCAGTGCCTCTGAATTTCTTCAGAAGGCTGCCTGCAAGAACTGATTGCATGCTCTGA 2331 0.4577 MQRPPPEDFLLKETKPHLGGGKVSGDKLTSTYDLVEQMQYLYVRVVKAKDLPAKDVTGSCDPYTEVKLGNYKGTTRHFEKKSNPEWNQVFAFSKDRIQASILEVTVKDKDVVRDDFIGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKAKGELMLAVWMGTQADEAFPEAWHSDAATVSGTDALANIRSKVYLSPKLWYLRVNVIEAQDLQPSDKGRYPEVFVKAALGNQTLRTRISQSRTINPMWNEDMMFVAAEPFEEPLILSVEDRVAPNKEESLGRCAIPLQMVDRRLDHKPVNTKWYNIEKHVVIMEGEKKKEIKFSSKIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGKGTTDAYCVAKYGQKWVRTRTIIDSFAPRWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKPGGGAKDSKIGKVRIRLSTLETDRVYTHSYPLLVLHPNGVKKMGEIHLAVRFTCSSLLNMMHMYSLPLLPKMHYIHPLTVSQLDNLRHQATQIVSMRLNRAEPPLRKEIVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFDQICNWKNPITTVLIHILFIILVMYPELILPTIFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEEFDTFPTTRHSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLVAAIVLYVTPFQVVALLTGIYVLRHPRFRHKLPSVPLNFFRRLPARTDCML* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00109 776 MobiDBLite consensus disorder prediction 1 15 - -
Lapu1g00109 776 FunFam C2 domain-containing protein 347 500 - -
Lapu1g00109 776 ProSiteProfiles C2 domain profile. 22 142 IPR000008 -
Lapu1g00109 776 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 40 177 IPR035892 -
Lapu1g00109 776 Pfam C2 domain 365 476 IPR000008 -
Lapu1g00109 776 Pfam C2 domain 201 307 IPR000008 -
Lapu1g00109 776 Pfam C2 domain 40 133 IPR000008 -
Lapu1g00109 776 Gene3D C2 domain 340 497 IPR035892 -
Lapu1g00109 776 Pfam Plant phosphoribosyltransferase C-terminal 621 776 IPR013583 -
Lapu1g00109 776 Gene3D C2 domain 39 161 IPR035892 -
Lapu1g00109 776 FunFam C2 domain-containing protein 188 334 - -
Lapu1g00109 776 Gene3D C2 domain 188 333 IPR035892 -
Lapu1g00109 776 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 364 506 IPR035892 -
Lapu1g00109 776 PANTHER PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 6 776 IPR047259 -
Lapu1g00109 776 ProSiteProfiles C2 domain profile. 181 305 IPR000008 -
Lapu1g00109 776 FunFam C2 domain-containing protein 35 179 - -
Lapu1g00109 776 ProSiteProfiles C2 domain profile. 347 474 IPR000008 -
Lapu1g00109 776 CDD C2D_MCTP_PRT_plant 365 493 IPR047255 -
Lapu1g00109 776 MobiDBLite consensus disorder prediction 1 23 - -
Lapu1g00109 776 SMART C2_3c 40 136 IPR000008 -
Lapu1g00109 776 SMART C2_3c 202 300 IPR000008 -
Lapu1g00109 776 SMART C2_3c 365 473 IPR000008 -
Lapu1g00109 776 CDD C2B_MCTP_PRT_plant 40 164 IPR047257 -
Lapu1g00109 776 CDD C2C_MCTP_PRT_plant 202 353 IPR047258 -
Lapu1g00109 776 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 355 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00109 Lapu-Chr1 5915748 5919720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00109 1 776 Lipid Metabolism Gene Families AT3G57880 90.722 0.0 1489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00109 - - gmx:100818371 1550.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00109 1 5915748 5919720 Lapu5g01376 5 26942583 26945532 ECH
Lapu1g00109 1 5915748 5919720 Lapu1g00109 1 5915748 5919720 ECH
Lapu1g00109 1 5915748 5919720 Lapu7g00213 7 2379451 2383372 PCT