Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00560 ATGGCAACGAGTTCTTCCAATGGAGCAACAAAGCAACCTCCCATGCCATCTCCCTTGCGTTTTTCCAAGTTTTTTCAGTCCAATATGAGAATTCTGGTTACTGGAGGAGCTGGATTTATTGGCTCTCACCTAGTTGACAGATTGATGGAAAATGAAAAAAATGAGGTTATTGTTGCTGACAACTTCTTCACTGGATCTAAAGACAACCTTAAAAAATGGATCGGCCATCCAAGATTCGAGTTAATTCGCCATGATGTCACAGAGCAATTGTTGGTTGAGGTTGATCAAATCTATCACCTTGCATGTCCTGCTTCTCCAATTTTCTACAAATACAATCCTGTAAAGACAATAAAGACAAATGTGATTGGAACACTGAACATGCTTGGGCTCGCTAAGCGTGTGGGAGCAAGGATTTTGCTTACATCTACTTCAGAAGTATATGGAGATCCTCTTGAGCATCCTCAACCTGAAAGCTATTGGGGCAATGTTAACCCTATTGGAGTTCGCAGCTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGTTTGATTATCACAGGCAGCATGGAATTGAAATACGCATTGCAAGAATCTTTAACACATATGGACCTCGCATGAATATTGATGATGGGCGTGTGGTCAGCAACTTCATTGCTCAAGCAATTCGTGGTGAACCCTTAACTGTCCAAGTTCCAGGAACTCAAACTCGCAGTTTCTGCTATGTCTCTGACATGGTAGATGGACTTATACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAACATCGGGAACCCAGGCGAATTTACAATGACTGAACTTGCCGAGACTGTGAAAGAGCTTATTAATCCAGCAGTGGAGATAAAGATGGTTGAGAACACTCCTGATGATCCTCGTCAGAGAAAACCAGACATAACAAAAGCAAAGGAATTGCTGGGATGGGAACCAAAGGTCAAGTTGCGTGATGGCCTTCCTCTTATGGAAGAGGATTTCCGTCAGAGGCTTGGGGTTCCCAAGAAAAACTAA 1029 0.4286 MATSSSNGATKQPPMPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDRLMENEKNEVIVADNFFTGSKDNLKKWIGHPRFELIRHDVTEQLLVEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLEHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQVPGTQTRSFCYVSDMVDGLIRLMEGENTGPINIGNPGEFTMTELAETVKELINPAVEIKMVENTPDDPRQRKPDITKAKELLGWEPKVKLRDGLPLMEEDFRQRLGVPKKN* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00560 342 CDD UGD_SDR_e 29 333 - -
Lapu11g00560 342 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 15 337 IPR044516 GO:0042732|GO:0048040|GO:0070403
Lapu11g00560 342 FunFam UDP-glucuronic acid decarboxylase 6 28 337 - -
Lapu11g00560 342 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 23 336 IPR036291 -
Lapu11g00560 342 Coils Coil 341 342 - -
Lapu11g00560 342 Gene3D - 153 337 - -
Lapu11g00560 342 Gene3D - 26 152 - -
Lapu11g00560 342 Pfam GDP-mannose 4,6 dehydratase 32 326 IPR016040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00560 Lapu-Chr11 8922663 8928389 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00560 31 325 Miscellaneous Gene Families AT4G00110 24.545 3.90e-17 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00560 K08678 - gmx:100819843 684.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00391 5 3246048 3251114 Lapu11g00560 11 8922663 8928389 PCT