Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00249 ATGGAAGAGAAACAAAAGTACCAGTTTTTGTCTTCCTTGTTAACCTTCTTCCTCTGTGTCTCTTCTGCTTACACTGAACCTCTTAACTCCCAAACCCTCATCCTCCGTAACCTCCCCAGTGCACCCACACTCTCCTGGCCCGAATCCACCACCTCAGGATCCGATCCTGAGCCCGACCCGTCCACCCTCTCCGTTCACCTCCACCACGTAGACGCACTCTCTCTCAACAAAACCCCCTCCCAACTCTTCCACCTAAGGCTCCAACGCGACGCCGTAAGAGTCAAAACCCTCTCCTCCCTCGCCGCATTGAACCAAACCAGACCTATCGCTTCCGGGTCGGGTTTCAGCAGTTCCGTTATCTCGGGTCTCGCTCAGGGTAGCGGCGAGTACTTCACGCGCTTAGGCGTGGGAACTCCTCCTAAGTATGTCTACATGGTTCTTGACACTGGCAGCGACGTCGTTTGGCTCCAATGCAAACCCTGCGCCAAATGCTACTCCCAAACCGATGAAATCTTCGATCCCTCAAAGTCCTCGTCTTTCTCCGGAATACCCTGCTCCTCTCCCCTCTGCCGCCGCCTCGACTCGCCGGGATGCAGCCGGAAAAGCAGCAATTGCCAGTACCAGGTTTCCTACGGCGACGGGTCGTTCACATTCGGCGATTTCTCAACGGAAACCCTTACGTTCCGACGAGCCCAAGTCCCGCGCGTGGCCCTCGGCTGCGGCCACGACAACGAGGGCCTCTTTGTGGGCGCCGCAGGTTTGTTGGGCCTAGGTCGCGGCGGGTTGTCGTTTCCATCCCAATCTGGAACCCGGTTCAACAACAAATTCTCTTATTGTTTGACCGACCGAGCCGCTTCCACCAAACCGTCTTCGATTGTGTTTGGCGACTCGGCCATTTCGCGAACCGCGCGGTTCACTCCTATAATTAATAACCCTAAACTCGATACCTTTTATTATCTCGAGTTACTTGGTATTAGCGTTGGTGGCGCGCCGGTTCGTGGCATTTCGGCTTCGCTCTTTCGTATCGACTCGACCGGGAATGGTGGAGTGATTATCGACTCGGGGACTTCCGTGACGCGCCTCACGCGACCTGCTTACGTGGCTCTCAGAGACGCGTTTCGGGTCGGAGCTTCGCGGTTGAAGCGTGCGCCCGAGTTCTCGCTTTTCGACACGTGTTATGATCTTTCGGGGCTGTCGGAGGTTAAGGTTCCGACCGTGGTGTTGCATTTTCGCGGTGCTGACATGTCGTTGCCGGCTGCGAATTATCTCATTCCGGTGGATAATAGCGGCAGATTCTGCTTTGCGTTCGCCGGAACGATGAGTGGGCTTTCAATTATTGGGAACATTCAACAACAAGGGTTTCGGGTCGTGTTTGATTTGGCGGGTTCTCGGGTAGGGTTTGCCCCAAGAGGCTGCGCGTGA 1422 0.5556 MEEKQKYQFLSSLLTFFLCVSSAYTEPLNSQTLILRNLPSAPTLSWPESTTSGSDPEPDPSTLSVHLHHVDALSLNKTPSQLFHLRLQRDAVRVKTLSSLAALNQTRPIASGSGFSSSVISGLAQGSGEYFTRLGVGTPPKYVYMVLDTGSDVVWLQCKPCAKCYSQTDEIFDPSKSSSFSGIPCSSPLCRRLDSPGCSRKSSNCQYQVSYGDGSFTFGDFSTETLTFRRAQVPRVALGCGHDNEGLFVGAAGLLGLGRGGLSFPSQSGTRFNNKFSYCLTDRAASTKPSSIVFGDSAISRTARFTPIINNPKLDTFYYLELLGISVGGAPVRGISASLFRIDSTGNGGVIIDSGTSVTRLTRPAYVALRDAFRVGASRLKRAPEFSLFDTCYDLSGLSEVKVPTVVLHFRGADMSLPAANYLIPVDNSGRFCFAFAGTMSGLSIIGNIQQQGFRVVFDLAGSRVGFAPRGCA* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00249 473 Gene3D Acid Proteases 294 473 IPR021109 -
Lapu10g00249 473 ProSiteProfiles Peptidase family A1 domain profile. 130 468 IPR033121 -
Lapu10g00249 473 CDD cnd41_like 129 472 IPR033873 -
Lapu10g00249 473 SUPERFAMILY Acid proteases 123 472 IPR021109 -
Lapu10g00249 473 PANTHER ASPARTYL PROTEASES 32 466 IPR001461 GO:0004190|GO:0006508
Lapu10g00249 473 FunFam aspartyl protease family protein 2 107 294 - -
Lapu10g00249 473 FunFam Aspartyl protease family protein 2 296 472 - -
Lapu10g00249 473 Pfam Xylanase inhibitor C-terminal 318 468 IPR032799 -
Lapu10g00249 473 Pfam Xylanase inhibitor N-terminal 130 296 IPR032861 -
Lapu10g00249 473 Gene3D Acid Proteases 114 293 IPR021109 -
Lapu10g00249 473 PRINTS Pepsin (A1) aspartic protease family signature 136 156 IPR001461 GO:0004190|GO:0006508
Lapu10g00249 473 PRINTS Pepsin (A1) aspartic protease family signature 444 459 IPR001461 GO:0004190|GO:0006508
Lapu10g00249 473 PRINTS Pepsin (A1) aspartic protease family signature 350 361 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00249 Lapu-Chr10 4533110 4534860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00249 120 472 Miscellaneous Gene Families AT1G77480 29.016 1.29e-32 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00249 K22683 - gmx:100808163 806.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00249 10 4533110 4534860 Lapu10g00249 10 4533110 4534860 ECH
Lapu6g01929 6 19193264 19195326 Lapu10g00249 10 4533110 4534860 PCT