Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1276 ATGTCACTACTCTCAGATTTAATAAACCTTAACCTCTCTGACACCACCGAGAAGATTATCGCCGAGTACATATGGGTGGGTGGATCTGGTGTGGACCTGAGGAGTAAAGCAAGGACCCTCTCAGGACCTGTTAATGACCCTTCAAAGCTTCCCAAGTGGAACTATGATGGATCCAGTACTGGCCAAGCTCCTGGAAAAGATAGTGAAGTGATCTTATGGCCACAAGCAATTTTCAAGGATCCATTCAGGAGGGGTAACAATATCCTGGTTATATGTGATACTTACACTCCTTCTGGAAAACCCATTCCCACAAACAAAAGACATGCTGCTGCAAAGATATTCAGCCATCCTGATGTTGCTGCTGAAGAACCCTGGTTTGGTATTGAGCAGGAATACACCTTGTTACAGAAAGATATTCATTGGCCTATTGGATGGCCACTTGGTGGTTTTCCTGGACCTCAGGGACCATACTATTGTGGTACTGGTGCTGAAAAAGCTTTTGGTCGTGATATTGTTGACTCACATTACAAAGCATGTCTTTATGCTGGAATTAACATTAGTGGCATTAATGCAGAAGTGATGCCTGGCCAGTGGGAATTCCAAGTTGGTCCAAGTATTGGTATCTCTGCTGGTGATGAGTTATGGGTTGCTCGTTACATTTTGGAGAGGATCACTGAGATTGCTGGGGTGGTCCTTTCCTTAGACCCGAAACCAATTCCGGGTGATTGGAATGGTGCTGGTGCTCACACTAATTACAGCACCAAGTCCATGAGAAATGATGGTGGCTATGAAGTCATAAAACAAGCAATTGAGAAGTTGGAGAAGAGACACAATGAGCACATTGCTGCTTATGGCGAAGGCAATGAACGTCGTCTAACCGGAAGACATGAAACTGCTGACATTAGTACTTTCTCGTGGGGTGTTGCAAACCGTGGAGCTTCTATTAGGGTGGGAAGGGACACTGAGAAAGAAGGGAAGGGATATTTTGAGGACAGAAGGCCTGCTTCTAACATGGACCCATATGTGGTTACTTCTATGATTGCAGAGACAACCCTTCTCTAG 1062 0.4501 MSLLSDLINLNLSDTTEKIIAEYIWVGGSGVDLRSKARTLSGPVNDPSKLPKWNYDGSSTGQAPGKDSEVILWPQAIFKDPFRRGNNILVICDTYTPSGKPIPTNKRHAAAKIFSHPDVAAEEPWFGIEQEYTLLQKDIHWPIGWPLGGFPGPQGPYYCGTGAEKAFGRDIVDSHYKACLYAGINISGINAEVMPGQWEFQVGPSIGISAGDELWVARYILERITEIAGVVLSLDPKPIPGDWNGAGAHTNYSTKSMRNDGGYEVIKQAIEKLEKRHNEHIAAYGEGNERRLTGRHETADISTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTLL* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1276 353 PANTHER GLUTAMINE SYNTHETASE 1 353 - -
Lan9g1276 353 ProSitePatterns Glutamine synthetase signature 1. 55 72 IPR027302 -
Lan9g1276 353 Gene3D Glutamine synthetase/guanido kinase, catalytic domain 104 353 - -
Lan9g1276 353 Pfam Glutamine synthetase, catalytic domain 166 254 IPR008146 GO:0004356|GO:0006807
Lan9g1276 353 ProSiteProfiles Glutamine synthetase (GS) catalytic domain profile. 106 353 IPR008146 GO:0004356|GO:0006807
Lan9g1276 353 Pfam Glutamine synthetase, beta-Grasp domain 22 97 IPR008147 GO:0004356|GO:0006542|GO:0006807
Lan9g1276 353 Coils Coil 263 283 - -
Lan9g1276 353 SUPERFAMILY Glutamine synthetase, N-terminal domain 15 102 IPR036651 GO:0004356|GO:0006542|GO:0006807
Lan9g1276 353 ProSiteProfiles Glutamine synthetase (GS) beta-grasp domain profile. 19 99 IPR008147 GO:0004356|GO:0006542|GO:0006807
Lan9g1276 353 SMART Gln_synt_C_2 103 351 IPR008146 GO:0004356|GO:0006807
Lan9g1276 353 PANTHER GLUTAMINE SYNTHETASE 1 353 - -
Lan9g1276 353 SUPERFAMILY Glutamine synthetase/guanido kinase 103 352 IPR014746 GO:0003824
Lan9g1276 353 ProSitePatterns Glutamine synthetase putative ATP-binding region signature. 237 253 IPR027303 -
Lan9g1276 353 Gene3D - 1 103 IPR036651 GO:0004356|GO:0006542|GO:0006807
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1276 Lan-Chr9 19974945 19978309 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1276 K01915 - csv:101221473 678.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0312 11 2033079 2036631 Lan9g1276 9 19974945 19978309 LSH
Lan9g1276 9 19974945 19978309 Lan4g0207 4 3477578 3486030 PCT
Lan9g1276 9 19974945 19978309 Lan16g0609 16 7470454 7475689 PCT