Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0609 ATGTCTCTGCTCACAGATCTTATCAACCTTAACATCTCCGAAACAACAGAGAAGGTTATTGCTGAGTACATATGGATTGGTGGATCAGGATTGGACCTGAGGAGCAAAGCAAGGACTCTACCAGGACCAGTTAGTGACCCTTCAGAGTTGCCCAAGTGGAATTATGATGGTTCTAGCACAGGTCAAGCCCCTGGTGAAGATAGTGAAGTGATCATATATCCTCAAGCTATTTTCAAGGATCCATTCAGAAGGGGTAACAATATTCTGGTTTTGTGTGATGCTTACACTCCTGCTGGAGAACCCATTCCGACTAACAAGAGACATGCTGCTGCCAAGATTTTCAGCAATCCTGATGTTGTTGCTGAGGAACCATGGTATGGTATTGAGCAGGAATATACTTTGTTGCAGAATCATGTCCAATGGCCTCTTGGTTGGCCTGTTGGTGGTTTTCCTGCACCTCAGGGACCATACTATTGTGCTATTGGTGCTGACAAAGCTTACGGTCGTGAAATTGTCGACGCACATTACAAAGCTTGTCTCTATGCTGGCATTAATGTGAGCGGAATTAATGGCGAAGTTATGCCTGGACAGTGGGAATTCCAAGTTGGTCCCTCTGTTGGAATCTCTGCTGGTGATGAAATATGGGTTGCTCGTTACATTTTGGAGAGAATCACTGAGATTGCTGGCACTGTGGTTTCCTTTGACCCCAAGCCAATTAAGGGTGATTGGAATGGTGCTGGTGCACACACAAATTACAGCACCAAGTCTATGAGGAATGATGGTGGCTATGAAATAATCAAACAAGCCATTGATAAGTTGGGTAAGAGGCATAAGGAGCACATTGCTGCTTATGGAGAAGGCAATGAGCGTCGTTTAACTGGAAAGCATGAGACAGCTGATATTAACACCTTCAAATGGGGAGTTGCAAACCGTGGTGCTTCCATTAGAGTTGGAAGGGACACAGAGAAAGAAGGGAAGGGATATTTTGAGGACAGAAGACCAGCTTCTAACATGGACCCATATGTGGTCACTTCCTTGATTGCTGAAACCACCCTTCTCTGGAAACCATGA 1071 0.45 MSLLTDLINLNISETTEKVIAEYIWIGGSGLDLRSKARTLPGPVSDPSELPKWNYDGSSTGQAPGEDSEVIIYPQAIFKDPFRRGNNILVLCDAYTPAGEPIPTNKRHAAAKIFSNPDVVAEEPWYGIEQEYTLLQNHVQWPLGWPVGGFPAPQGPYYCAIGADKAYGREIVDAHYKACLYAGINVSGINGEVMPGQWEFQVGPSVGISAGDEIWVARYILERITEIAGTVVSFDPKPIKGDWNGAGAHTNYSTKSMRNDGGYEIIKQAIDKLGKRHKEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSLIAETTLLWKP* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0609 356 MobiDBLite consensus disorder prediction 40 66 - -
Lan16g0609 356 ProSitePatterns Glutamine synthetase signature 1. 55 72 IPR027302 -
Lan16g0609 356 Gene3D - 1 103 IPR036651 GO:0004356|GO:0006542|GO:0006807
Lan16g0609 356 Pfam Glutamine synthetase, beta-Grasp domain 23 97 IPR008147 GO:0004356|GO:0006542|GO:0006807
Lan16g0609 356 Pfam Glutamine synthetase, catalytic domain 152 254 IPR008146 GO:0004356|GO:0006807
Lan16g0609 356 PANTHER GLUTAMINE SYNTHETASE CYTOSOLIC ISOZYME 1-2 1 356 - -
Lan16g0609 356 SUPERFAMILY Glutamine synthetase/guanido kinase 103 353 IPR014746 GO:0003824
Lan16g0609 356 ProSiteProfiles Glutamine synthetase (GS) beta-grasp domain profile. 19 99 IPR008147 GO:0004356|GO:0006542|GO:0006807
Lan16g0609 356 SUPERFAMILY Glutamine synthetase, N-terminal domain 14 102 IPR036651 GO:0004356|GO:0006542|GO:0006807
Lan16g0609 356 Gene3D Glutamine synthetase/guanido kinase, catalytic domain 104 356 - -
Lan16g0609 356 ProSiteProfiles Glutamine synthetase (GS) catalytic domain profile. 106 356 IPR008146 GO:0004356|GO:0006807
Lan16g0609 356 ProSitePatterns Glutamine synthetase putative ATP-binding region signature. 237 253 IPR027303 -
Lan16g0609 356 PANTHER GLUTAMINE SYNTHETASE 1 356 - -
Lan16g0609 356 SMART Gln_synt_C_2 103 351 IPR008146 GO:0004356|GO:0006807
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0609 Lan-Chr16 7470454 7475689 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0609 K01915 - rcu:8279712 699.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0207 4 3477578 3486030 Lan16g0609 16 7470454 7475689 LSH
Lan11g0312 11 2033079 2036631 Lan16g0609 16 7470454 7475689 PCT
Lan9g1276 9 19974945 19978309 Lan16g0609 16 7470454 7475689 PCT