Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1167 ATGGGAAGAATTTCAAGGATTGGAAGTTATGCAATTGCCTCTTCAATACAAGAAAATCAACAACAACAAACTTGCATTACCTGCACCACTTTTAACATTCTTGCTCCAATATACAAGCGCCTCAACCATGAGGATCAGAGTAGCCGCGAAAGCGACTTTAGAGCAAATTGGTTGGCCAGGAACCATAGGATATTGGATTGGTTGTTGTATGAGAGGTCTTCCATTATCTGTCTTCAGGAATTTTGGGTTGGAAATGAGGAGCTTGTTAATTTGTATGAGAAGAGACTTGGTGATGCTGGTTATATTAGTTTCAAGCTCGGAAGGACTAACAACCGCGGCGACGGCCTTCTGATTGCAGTTCAAAAGGAACATTTTGAAGTTATTAACTATAAGGAGTTGCACTTCAATGATTGTGGTGATCGCGTAGCTCAATTGTTACATGTTAAGTTAGCTTTTCCCTTTACAGAATGCAAGAACAGTGATATTAGGCAGGAAGTTCTTATTGTCAATACTCACCTACTATTCCCTCATGATTCAAGTCTATGCCGTGTAAGACTCAATCAGGTCTACAAGATGCTTCAATATGTGGAATCTTATCAGAAAGAGAACCAACTTAAGCCTTTGCCGATTATGCTATGCGGTGACTGGAATGGAAGCAAACGCGGAAATATTTATAAGTTCCTGAGGTCACAGGGGTTTGTATCATCATATGATACAGCACACCACTACACTGATGCAGATGCTCACAAGTGGGTTAGCCACCGTAATCATCGAGGAAATATATGCGCTGTTGATTTTATATGGCTTCTAAATCCTGACAAATATCGAAAAGTGCTTAAATCGAGTTGGAGTGAAGCTGTATTTGGCATGTTCAAGTATCTATTGCGGAGAGCTTCACTGACAGAGAGAGATGCATTTGCCCTTCTTAAGGCTGATAATGAAGATTTTATTACCTATTCTGGTTTCTGTGAAGCACTTCGGCAGCTTAATTTAACTGGACATTGCCATGGCCTAAGTATTGATGAGATTAAGGACTTGTGGATCCAAGCAGATAATGACGGAAATGGTGTTCTTGATTACAAAGAATTTATGCAGCAAATATGGAACCAAACAGGGTCAGATGAGAGATATGACAACAATAATGAGCATGTGGATGATAGTGAGGAGCAAACAATTGGTTTTAGTGTAAAAAAAGCAGTTCTGTTCCCTCCTGAGGTAGAGAAAGGTACATGGCCTGAAGATTACTCCCTTTCTGATCATGCAAAACTCACTGTTGCATTCTCAACAATAAAAATGAGATGCTCACAAATGATTTCTCAGAAATCCTTGAGAACACTCTAG 1341 0.3982 MGRISRIGSYAIASSIQENQQQQTCITCTTFNILAPIYKRLNHEDQSSRESDFRANWLARNHRILDWLLYERSSIICLQEFWVGNEELVNLYEKRLGDAGYISFKLGRTNNRGDGLLIAVQKEHFEVINYKELHFNDCGDRVAQLLHVKLAFPFTECKNSDIRQEVLIVNTHLLFPHDSSLCRVRLNQVYKMLQYVESYQKENQLKPLPIMLCGDWNGSKRGNIYKFLRSQGFVSSYDTAHHYTDADAHKWVSHRNHRGNICAVDFIWLLNPDKYRKVLKSSWSEAVFGMFKYLLRRASLTERDAFALLKADNEDFITYSGFCEALRQLNLTGHCHGLSIDEIKDLWIQADNDGNGVLDYKEFMQQIWNQTGSDERYDNNNEHVDDSEEQTIGFSVKKAVLFPPEVEKGTWPEDYSLSDHAKLTVAFSTIKMRCSQMISQKSLRTL* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1167 446 PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN 1 435 - -
Lan9g1167 446 Pfam Endonuclease/Exonuclease/phosphatase family 31 235 IPR005135 GO:0003824
Lan9g1167 446 ProSitePatterns EF-hand calcium-binding domain. 351 363 IPR018247 -
Lan9g1167 446 Gene3D Endonuclease/exonuclease/phosphatase 10 440 IPR036691 -
Lan9g1167 446 Gene3D - 273 367 - -
Lan9g1167 446 SUPERFAMILY DNase I-like 21 241 IPR036691 -
Lan9g1167 446 ProSiteProfiles EF-hand calcium-binding domain profile. 338 373 IPR002048 GO:0005509
Lan9g1167 446 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 1 435 - -
Lan9g1167 446 SUPERFAMILY EF-hand 303 444 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1167 Lan-Chr9 19097726 19100913 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1167 2 331 EF-hand Containing Proteins AT5G54130 78.550 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1167 - - gmx:100792805 739.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g1167 9 19097726 19100913 Lan15g0582 15 13199321 13204166 PCT
Lan15g0582 15 13199321 13204166 Lan9g1167 9 19097726 19100913 PCT