Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0640 ATGGCTCAACAGCAATTCGATCCATATTACCTGTACCAACAAGATGACCGGAGCAGCATCAACACACTCTTCATCTCCGGTCTCCCAGACGACGTCAAGGCGCGTGAGATTCACAACCTCTTCCGCCTCCGTCCCGGCTTCGACGCCTGCCAGCTCAAGTACACCGGCCGCGGCAACCAGGTTGTTGCATTTGCTACCTTTTTCAACCATCAATCAGCAATGGCAGCATTGCATGCCTTGAATGGTGTAAAATTTGATCCTCAATCTGGATCTGTTTTACATATCGAACTTGCTAGGTCAAATTCAAGGAGAAAGCATATGCCAGGTGGCGCAGCTTATGTGGTTATTGATAAAAGGTCTAAAAAGGGGGAAGCTGATGATCAGCGTTCATCAAGTGATGATGGTGAATTTGAAAGTGACCCTGATGAATCATCAGGAAGTGGCAGCGACCATGGTGATTTAGCAACCACGAAAAGTGATGAGGATGTTGTTGCTTCCGGCAATGCTGTAGAGCAGCATCAAAAGGGTTCTGATGGTGGACCGTGCTCCACTCTCTTTATTGCAAATCTTGGTCCAAACTGCACTGAAGATGAACTAAAGCAAGCTTTTTCTGTGCATGCTGGATTCAACCTGGTCAAAATGCGTTCTAGAGGAGGAATGCCCGTTGCATTTGCTGATTTTGAGGAAACTGATCAAGCTACTAAGGTCATGGAGCAGCTTCAAGGCAGCTTACTGCCATCATCAGATCGTGGGGGCATGCACATCGAATATGCAAGGTCTAAAATGAGGAAGCGTTAG 798 0.4712 MAQQQFDPYYLYQQDDRSSINTLFISGLPDDVKAREIHNLFRLRPGFDACQLKYTGRGNQVVAFATFFNHQSAMAALHALNGVKFDPQSGSVLHIELARSNSRRKHMPGGAAYVVIDKRSKKGEADDQRSSSDDGEFESDPDESSGSGSDHGDLATTKSDEDVVASGNAVEQHQKGSDGGPCSTLFIANLGPNCTEDELKQAFSVHAGFNLVKMRSRGGMPVAFADFEETDQATKVMEQLQGSLLPSSDRGGMHIEYARSKMRKR* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0640 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 246 IPR000504 GO:0003723
Lan9g0640 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 86 IPR000504 GO:0003723
Lan9g0640 265 MobiDBLite consensus disorder prediction 103 180 - -
Lan9g0640 265 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 11 254 - -
Lan9g0640 265 PANTHER RNA-BINDING PROTEIN-RELATED 11 254 - -
Lan9g0640 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 260 IPR000504 GO:0003723
Lan9g0640 265 MobiDBLite consensus disorder prediction 117 135 - -
Lan9g0640 265 SUPERFAMILY RNA-binding domain, RBD 21 245 IPR035979 GO:0003676
Lan9g0640 265 CDD RRM_scw1_like 181 259 - -
Lan9g0640 265 CDD RRM_RBPMS_like 21 96 - -
Lan9g0640 265 Gene3D - 16 103 IPR012677 -
Lan9g0640 265 SMART rrm1_1 184 256 IPR000504 GO:0003723
Lan9g0640 265 SMART rrm1_1 22 96 IPR000504 GO:0003723
Lan9g0640 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 100 IPR000504 GO:0003723
Lan9g0640 265 Gene3D - 177 265 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0640 Lan-Chr9 9428941 9434184 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0640 - - cam:101503574 400.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0640 9 9428941 9434184 Lan9g0640 9 9428941 9434184 ECH
Lan9g0640 9 9428941 9434184 Lan2g0408 2 4247446 4251258 LSH