Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0408 ATGGCTCAGCAGCAATTCGATCCATATTACATCTACCAACAACATGACCGGAGCAACATCAACACGCTCTTCGTCTCCGGTCTCCCTGACGACGTTAAGGCGCGTGAGATTCACAACCTCTTCCGCCGCCGTCCCGGCTTCGACGCTTGCCAGCTCAAATACACCGGCCGCGGTAACCAGGTTGTTGCATTTGCTACCTTTTTCAATCATCAATCTGCAATTGCAGCATTGCACGCTTTGAATGGTATAAATTTTGACCCTCAATCCGGGTCTGTTTTACATATCGAACTTGCTAGGTCAAACTCAAGGAGGAAGCGCAAGCCAGGTAGTGGAGCTTATGTGGTTATTGATAAAAGGTCTAAAAAGGGGGAGATTGATGTTCAGGGTTCATCAAGTGATGATGGTGAATATGAAAGTGACCCCGATGAAGAATCGGGAAGTGGTAGCGACCATGGTGATTTAGCAACCACAAAAAGTGGTGAGACTGCGGTTGATTCTGGCAATGCTGTATCTATGGAGCAGCATCCAAAGGATGCTGATGGTGGACCATGCTCCACTCTCTTTATTGCAAATCTTGGTCCAAACTGCACTGAAGATGAATTGAAGCAAGCTTTTTCTGTGCATGCGGGATTCAACCTGGTGAAAATGCGTTCTAGAGGAGGAATGCCAGTTGCATTTGCTGATTTTGATGAAACCGAACAAGCTACTAAGGTCATGGAGCAGCTTCAGGGCAGTTTACTGCCATCATCCGATCGGGGTGGCATGCACATCGAATATGCAAGGTCTAAAATGAGGAAGCGTTAG 804 0.4714 MAQQQFDPYYIYQQHDRSNINTLFVSGLPDDVKAREIHNLFRRRPGFDACQLKYTGRGNQVVAFATFFNHQSAIAALHALNGINFDPQSGSVLHIELARSNSRRKRKPGSGAYVVIDKRSKKGEIDVQGSSSDDGEYESDPDEESGSGSDHGDLATTKSGETAVDSGNAVSMEQHPKDADGGPCSTLFIANLGPNCTEDELKQAFSVHAGFNLVKMRSRGGMPVAFADFDETEQATKVMEQLQGSLLPSSDRGGMHIEYARSKMRKR* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0408 267 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 262 IPR000504 GO:0003723
Lan2g0408 267 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 248 IPR000504 GO:0003723
Lan2g0408 267 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 86 IPR000504 GO:0003723
Lan2g0408 267 Gene3D - 17 108 IPR012677 -
Lan2g0408 267 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 10 256 - -
Lan2g0408 267 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 100 IPR000504 GO:0003723
Lan2g0408 267 SUPERFAMILY RNA-binding domain, RBD 21 247 IPR035979 GO:0003676
Lan2g0408 267 PANTHER RNA-BINDING PROTEIN-RELATED 10 256 - -
Lan2g0408 267 MobiDBLite consensus disorder prediction 124 161 - -
Lan2g0408 267 CDD RRM_scw1_like 183 261 - -
Lan2g0408 267 CDD RRM_RBPMS_like 21 96 - -
Lan2g0408 267 Gene3D - 177 267 IPR012677 -
Lan2g0408 267 SMART rrm1_1 22 96 IPR000504 GO:0003723
Lan2g0408 267 SMART rrm1_1 186 258 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0408 Lan-Chr2 4247446 4251258 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0408 - - gmx:100783764 413.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0640 9 9428941 9434184 Lan2g0408 2 4247446 4251258 LSH