Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0628 ATGTTTTCAGTTCCAGTAGTAGGTGGACTCTTCAACAAGGGTCATAAGGTTAAGGGGACTGTGGTGTTAATGGGCAAGAATGTGTTGGATTTGAATGAGATAACCGCCGTGGCTAGTGGCGGCGTAGGCGGGGCTGTCGGAGGAGCTCTTGGCACTCTTACCGGAATACTTGGCTCAGCAGTTGATGGTGCTACTTCCATCTTCAGCCAGAGCATTGCCCTTCAGTTGATTAGTGCTACAAAGACCGATGGACAAGGAAATGGGAAAGTTGGAAAGCAAACATATTTGCAGAAACATCTTCCTACATTACCAAACTTAGGAGCTGCACAAGATGCATTTGATATATATTTTGAATGGGATGATGATTTTGGAATTCCAGGAGCATTTTACATTAAAAACTTTATGCAAGTTGAATTTTTCCTTGTTAGTGTTACTCTTGAAGACATTCCAAATCATGGGTCTATTCACTTTGATTGCAAGTCATGGATTTACAATGCAAAAAAATACAAAAATGACCGCATTTTCTTTGTCAATCAGACTTTCCTTCCAAGTGAAACTCCTGCTGCACTAGTCAAGTATAGAGAAGAGGAATTGCAAAATTTAAGAGGAGATGGAAAAGGTGAGCGCAAAGAATGGGATAGGATCTATGATTATGATGTCTACAACGATTTGGGGAACCCGGACGCGGGTGCAAAATCTGCTCGTCCTGTTCTCGGAGGGTCTAGCTCACATCCTTACCCTCGCAGGGGAAGAACCGGTAGAAAAGCAACAAGGAAAGATCCTAAGAGCGAGACGCCGAGCTCGAGTGTGTATGTTCCAAGAGATGAAAATTTTGGTCACTTGAAATCATCAGATTTCCTTACATATGGAATAAAGTCAATATCACAAACTCTCTTGCCTACTTTCACTTCTAAAATCTTTACTGAGTTTAATAGCTTCGATGAGGTGCGCAGTCTCTACGATGGTGGAATTCGTTTGCCTACAGATGTCTTTAGCAAAATTAGCCCGTTACCGGTGCTCAAGGAAATCTTACGCACTGATGGTGAACAAGTTCTCAAGTTTCCACCACCTAAAGTCATCAGTGTTAGTAAATCTGCATGGATGACTGATGAAGAATTCGGAAGAGAAATGCTTGCTGGTGTAAATCCTTGCGTAATTCGTCGCCTTCAAGAGTTCCCACCACAAAGCGCGCTTGATGCCGCAATTTACGGTGATCAAGCTAGTACAATAACTAAAGAACACTTGGAGGTTAACCTTGAAGGGGTAACATTTGAACAGGCACTTAGTGGTCAGAGATTGTTCATATTAGACTATCATGATGCATTCATCCCGTATTTGAGGAAGATCAACGAATTTGCGAAGTCTTATGCTACAAGGACTATCCTTTTCTTAAAAGACGATGGGACTTTAAAGCCACTAGTCATCGAATTAAGTTTGCCACATCCCGATGGAGATCAGTTCGGAGCTGATAGTAAAGTCGTCTTGCCTGCAACCGAAGGTGCTGAAAGTACAATTTGGCTATTGGCCAAGGCTTATGTGATTGTGAATGACTCATGCTATCATCAGCTCATGAGCCACTGGTTAAATACTCACGCAGCGATGGAGCCATTCATCATAGCAACAAACAGGCACCTAAGTGTGCTTCACCCGATTTATAAACTTTTGTATCCCCACTACCGTGACACTATGAATATCAATGCACTTGCCCGGAGTTCGCTTATTAATGCAGGTGGAATTATAGAGCAAACATTCTTGCCCGGGCCATATTCGGTGGAGATATCTTCAGCGGTTTATAAGAATTGGGTTTTCCCTGATCAAGCACTACCTGCTGATCTTATCAAGAGAGGATTGGCATCTGAGGATTCTTCTTCCCCCCACGGCCTTCGGCTGGTGATAGAGGACTATCCTTATGCTGTTGATGGACTCGAAATTTGGGATGCTATTAAGACATGGGTTCGAGACTACGTCTCCTTGTATTACACGACGAATGAGGCAGTTCAAAAAGATTCTGAACTTCAAGCTTGGTGGAAGGATGTTGTAGAGAATGGGCATGCTGACTTGAAAGATAAGCCATGGTGGCCAAAGTTGCAGACTATTGATGAGCTGATCCAGTCCAGCTCTACCATCATATGGATTGGTTCGGCTCTTCACGCGGCTGTTAATTTCGGACAATATCCTTATGGAGGTTACATCCTGAACCGTCCAACTCTTAGCCGAAGGTTGATCCCAGAAAAAGGAACTCCTGAATATGATGAGTTGGGTACAAACCCACAAAAGTCTTATTTAAGAACAATTACAGCGAAGAGTGAGGCCCTTGTCGACCTTTCGGTAATAGAGATATTATCAAGGCATGCTTCTGATGAAATCTACCTTGGGCAAAGAGATAATCCAAACTGGACATCAGATACAAGGGCATTGCAAGCCTTCAAAAAGTTCGGAACAACGCTGGCAGAAATCGAACAAAACATTACAAGAAGAAACAATGACTCAAGCCAGCGAAACCGAACCGGCCCGGTTGAACTGCCCTACACTTTGCTCCTTCCAACCAGTAAAGAAGGGTTAACTTTCAGAGGAATACCCAACAGTATCTCTATCTAA 2598 0.4315 MFSVPVVGGLFNKGHKVKGTVVLMGKNVLDLNEITAVASGGVGGAVGGALGTLTGILGSAVDGATSIFSQSIALQLISATKTDGQGNGKVGKQTYLQKHLPTLPNLGAAQDAFDIYFEWDDDFGIPGAFYIKNFMQVEFFLVSVTLEDIPNHGSIHFDCKSWIYNAKKYKNDRIFFVNQTFLPSETPAALVKYREEELQNLRGDGKGERKEWDRIYDYDVYNDLGNPDAGAKSARPVLGGSSSHPYPRRGRTGRKATRKDPKSETPSSSVYVPRDENFGHLKSSDFLTYGIKSISQTLLPTFTSKIFTEFNSFDEVRSLYDGGIRLPTDVFSKISPLPVLKEILRTDGEQVLKFPPPKVISVSKSAWMTDEEFGREMLAGVNPCVIRRLQEFPPQSALDAAIYGDQASTITKEHLEVNLEGVTFEQALSGQRLFILDYHDAFIPYLRKINEFAKSYATRTILFLKDDGTLKPLVIELSLPHPDGDQFGADSKVVLPATEGAESTIWLLAKAYVIVNDSCYHQLMSHWLNTHAAMEPFIIATNRHLSVLHPIYKLLYPHYRDTMNINALARSSLINAGGIIEQTFLPGPYSVEISSAVYKNWVFPDQALPADLIKRGLASEDSSSPHGLRLVIEDYPYAVDGLEIWDAIKTWVRDYVSLYYTTNEAVQKDSELQAWWKDVVENGHADLKDKPWWPKLQTIDELIQSSSTIIWIGSALHAAVNFGQYPYGGYILNRPTLSRRLIPEKGTPEYDELGTNPQKSYLRTITAKSEALVDLSVIEILSRHASDEIYLGQRDNPNWTSDTRALQAFKKFGTTLAEIEQNITRRNNDSSQRNRTGPVELPYTLLLPTSKEGLTFRGIPNSISI* 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0628 865 Pfam PLAT/LH2 domain 85 176 IPR001024 GO:0005515
Lan9g0628 865 Gene3D PLAT/LH2 domain 7 181 - -
Lan9g0628 865 PRINTS Lipoxygenase signature 503 520 IPR013819 GO:0016702|GO:0046872
Lan9g0628 865 PRINTS Lipoxygenase signature 521 538 IPR013819 GO:0016702|GO:0046872
Lan9g0628 865 PRINTS Lipoxygenase signature 541 561 IPR013819 GO:0016702|GO:0046872
Lan9g0628 865 PANTHER LIPOXYGENASE 9 865 IPR000907 GO:0016702|GO:0046872
Lan9g0628 865 Gene3D - 499 864 - -
Lan9g0628 865 Pfam Lipoxygenase 190 848 IPR013819 GO:0016702|GO:0046872
Lan9g0628 865 SUPERFAMILY Lipoxigenase 182 865 IPR036226 -
Lan9g0628 865 ProSitePatterns Lipoxygenases iron-binding region signature 2. 548 558 IPR020834 GO:0016702|GO:0046872
Lan9g0628 865 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 180 865 IPR013819 GO:0016702|GO:0046872
Lan9g0628 865 Gene3D - 182 281 - -
Lan9g0628 865 SMART LH2_4 15 178 IPR001024 GO:0005515
Lan9g0628 865 Gene3D - 282 365 IPR027433 -
Lan9g0628 865 PRINTS Plant lipoxygenase signature 147 165 IPR001246 GO:0016491
Lan9g0628 865 PRINTS Plant lipoxygenase signature 173 194 IPR001246 GO:0016491
Lan9g0628 865 PRINTS Plant lipoxygenase signature 212 228 IPR001246 GO:0016491
Lan9g0628 865 PRINTS Plant lipoxygenase signature 245 264 IPR001246 GO:0016491
Lan9g0628 865 PRINTS Plant lipoxygenase signature 307 328 IPR001246 GO:0016491
Lan9g0628 865 PRINTS Plant lipoxygenase signature 352 368 IPR001246 GO:0016491
Lan9g0628 865 PRINTS Plant lipoxygenase signature 391 410 IPR001246 GO:0016491
Lan9g0628 865 PRINTS Plant lipoxygenase signature 456 480 IPR001246 GO:0016491
Lan9g0628 865 PRINTS Plant lipoxygenase signature 778 792 IPR001246 GO:0016491
Lan9g0628 865 MobiDBLite consensus disorder prediction 228 276 - -
Lan9g0628 865 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 14 181 IPR036392 GO:0005515
Lan9g0628 865 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE 9 865 - -
Lan9g0628 865 Gene3D - 366 498 - -
Lan9g0628 865 ProSiteProfiles PLAT domain profile. 49 177 IPR001024 GO:0005515
Lan9g0628 865 CDD PLAT_LH2 15 178 IPR042057 -
Lan9g0628 865 ProSitePatterns Lipoxygenases iron-binding region signature 1. 521 535 IPR020833 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0628 Lan-Chr9 9158966 9164432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0628 8 865 Acyl Lipid Metabolism Gene Families AT1G55020 56.914 0.0 1017
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0628 K15718 - gmx:100127399 1380.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2153 6 31967249 31986896 Lan9g0628 9 9158966 9164432 PCT
Lan3g0236 3 1544504 1549874 Lan9g0628 9 9158966 9164432 PCT