Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0546 ATGAGGTCCGGCGAAGGAATAAGAGCGGTGGTGGCCGGAGAAAGAGGCAGCGGAAAATCAAGTCTGATTTGTGCAATCGCATCTGAGTCATTCCCTCACCTTGTTCCTCATGTTCTTCCTCCCACTCATTTGCCTCCTGATCTCTTCTTCCCTCATCATCTTCCTCTTACCGTCATTGACACCTCTTCCGTATTGGAAAAACAAGGGAACCGTAACGATGAATTGAAGCGAGCCGATGTAGTGCTTTTAACATATGCTTGCAATGATCCATCATCCTTTACGCGCTTGCATTCTTATTGGCTTCCTCAATTGCACAACCTCGAGGTGAAGGCACCTGTAATTGTGGTTGGTTGCAAGTTAGACCTAAGGGATGAAAACCAGCAAGTGAGCTTAGAGACTATAATGCCCCAGCTCTTACAACACAGCAAGTATATTGCCACATGTATTGAATGTTCAGCATATACCTTATACCAGGTCCCTGAAGTTTTTTATTTTGCTCAAAAAGCGGTGCTGCATCCGTTAGATCCATTGTTTGATCATGAAAGCCAAGCTTTAACTGATCAATGTGTTAGGGCATTGAGAAGAATATTTGTTCTTTGCGATCGCAACATGGATGATGCCCTCGATGATACAGAACTGAATGAATTTCAGGTTAGATGCTTTGGTGCACCATTGCAGTCATCTGAAATAGCAGGGGTCAAAACACTTGTTCAGCAGAAAGTACCTGAAGGACTCAACTCTAATGGTCTTACTTTTCCAGGATTTATTTATATACATAAGATATTTCTAAAGAAAGGGCGTCCAGAGACACTATGGGCTGTACTAAGAAACTTTGGATATGATAATGATTTAAAACTCCAGGATGATTTCCTTCCAATTCCATCTAAGATTGCCCCTGATCAGAGTGTGGAGCTGACCAGCGAAGCTGTAGAGTTTCTAAATGGTGTCTTCCGACTGGTAGATATGGATAAAGATCGAGCCCTTCGACCTGCTGAAGTTGATAAGCTATTTTGTACTGCTCCACAAAGTCCGTGGAATGATGCTCCATATAAGGATGCAGCTGAGAGAACGGACATAGGTTACATGTCTCTTAATGGATTTCTATCCCTGTGGGCTCTTATGACATTAATTGATCCACGACATAGCCTAGCTAATTTGATTTACATAGGATATAGTGGTAATCCTGCTGCAGCACTCCGTGTTACTCGTAGAAGATCAGTAGATCGCAGAAAGCAAGCAACCGAAAGGAATGTGTTTCAATGCTATGTTTTTGGTTCTAAAAATGCCGGGAAATCTGCTATTTTGGAATCATTGTTGGGAAGGTCTTTCTCAAATAATTATACTCCAACAACGGTTGAGCAGTTTGCAGCAAATTCCATTGAATTACTAGGGGGAACTAGGAAAACTCTTGTATTGCGGGAGATACCAGAGGGCGCAGTATCGAAAGTTTTGTCAAATCAGGATTATTTGGCAGCATGTGATGTAGCTGTTTTTGTGTATGACAGCTCAGATGAACATTCATGGAAGAAATCCAGAGGTTTGCTTGATAAGGTTGCTAGACAAGGAGAACAAACTGGTTATAAAGTTCCTTGTCTCCTTATTGCTGCTAAGGATGATTTAACTCCCTACCCAAGGGCAGTACAAGATTCAGTCAAGGTTACTCAGGAACTGGGAATAGAGGCACCTATTCACCTAAGTATGAAATTAGGGGATTCAAATAACGTGTACAATAAGATTGTTAGTGCTGCAGAACACCCTCATTTAAGCATTCCAGAAACTGAGATCGGGAGGAAAAGAAAGCAATACCAACAACTTCTTCAGAACTCTCTTATTTTTGCCTCAGTTGGGACGGTTGTGGCAGTTGTTGGTATAGCAGCAATGCGTGCATATGCAGTGAAGAAAAATTCTTCTGCTTAG 1917 0.4194 MRSGEGIRAVVAGERGSGKSSLICAIASESFPHLVPHVLPPTHLPPDLFFPHHLPLTVIDTSSVLEKQGNRNDELKRADVVLLTYACNDPSSFTRLHSYWLPQLHNLEVKAPVIVVGCKLDLRDENQQVSLETIMPQLLQHSKYIATCIECSAYTLYQVPEVFYFAQKAVLHPLDPLFDHESQALTDQCVRALRRIFVLCDRNMDDALDDTELNEFQVRCFGAPLQSSEIAGVKTLVQQKVPEGLNSNGLTFPGFIYIHKIFLKKGRPETLWAVLRNFGYDNDLKLQDDFLPIPSKIAPDQSVELTSEAVEFLNGVFRLVDMDKDRALRPAEVDKLFCTAPQSPWNDAPYKDAAERTDIGYMSLNGFLSLWALMTLIDPRHSLANLIYIGYSGNPAAALRVTRRRSVDRRKQATERNVFQCYVFGSKNAGKSAILESLLGRSFSNNYTPTTVEQFAANSIELLGGTRKTLVLREIPEGAVSKVLSNQDYLAACDVAVFVYDSSDEHSWKKSRGLLDKVARQGEQTGYKVPCLLIAAKDDLTPYPRAVQDSVKVTQELGIEAPIHLSMKLGDSNNVYNKIVSAAEHPHLSIPETEIGRKRKQYQQLLQNSLIFASVGTVVAVVGIAAMRAYAVKKNSSA* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0546 638 ProSitePatterns EF-hand calcium-binding domain. 201 213 IPR018247 -
Lan9g0546 638 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 415 590 IPR027417 -
Lan9g0546 638 PANTHER RHO FAMILY GTPASE 7 486 IPR003578 GO:0005525|GO:0007264
Lan9g0546 638 PANTHER MITOCHONDRIAL RHO GTPASE 7 486 - -
Lan9g0546 638 Pfam Ras family 423 548 IPR001806 GO:0003924|GO:0005525
Lan9g0546 638 Pfam Ras family 9 170 IPR001806 GO:0003924|GO:0005525
Lan9g0546 638 PIRSF Miro 3 638 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0007005|GO:0031307
Lan9g0546 638 SUPERFAMILY EF-hand 183 373 IPR011992 -
Lan9g0546 638 PRINTS Transforming protein P21 ras signature 7 28 - -
Lan9g0546 638 PRINTS Transforming protein P21 ras signature 109 122 - -
Lan9g0546 638 PRINTS Transforming protein P21 ras signature 148 170 - -
Lan9g0546 638 CDD Miro2 415 594 - -
Lan9g0546 638 Gene3D - 4 175 IPR027417 -
Lan9g0546 638 Gene3D - 482 583 IPR027417 -
Lan9g0546 638 Gene3D - 180 284 - -
Lan9g0546 638 Pfam EF hand associated 224 308 IPR013567 -
Lan9g0546 638 ProSiteProfiles Miro domain profile. 4 172 IPR020860 GO:0003924|GO:0005525
Lan9g0546 638 SMART rho_sub_3 9 173 IPR001806 GO:0003924|GO:0005525
Lan9g0546 638 Gene3D - 286 476 - -
Lan9g0546 638 Pfam EF hand associated 345 412 IPR013566 -
Lan9g0546 638 SMART rab_sub_5 7 173 - -
Lan9g0546 638 ProSiteProfiles Miro domain profile. 416 585 IPR020860 GO:0003924|GO:0005525
Lan9g0546 638 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 205 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0546 Lan-Chr9 8180566 8185982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0546 7 636 EF-hand Containing Proteins AT3G63150 58.889 0.0 797
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0546 K07870 - gmx:100782061 1002.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0546 9 8180566 8185982 Lan4g1708 4 25774800 25782204 LSH
Lan9g0546 9 8180566 8185982 Lan9g0546 9 8180566 8185982 PCT
Lan9g0546 9 8180566 8185982 Lan4g1708 4 25774800 25782204 PCT
Lan4g1708 4 25774800 25782204 Lan9g0546 9 8180566 8185982 PCT