Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1708 ATGGTAGGTCGCTCAAGCTTCGGCGATCGTAAGGGAGTTAGAATTGCCGTCGTAGGCGATGGTGGCACCGGAAAATCCACACTCATCGCCGCCATGGCTTCCGAGTCTTTTCCCGATTCCGTTCCGCCCGTTCTTCCACCCACTCGCTTGCCTCATAATTTGTACCCTGATTCTGTTCCTATTACCCTCATTGACACACCTTCCAGTTTGGAAAAACAAGGTGCACGCAATGAAGAATTGAAAATAGCTGATGCAGTGGTTGTAACATATGCTTGTGATGAACCTGTCACCTTTGATCGTTTGGGTACTTACTGGCTCATTGAACTGCAGAGATTGGAGGTGAAGGCACCTGTGGTTGTGGTTGGTTGCAAGATGGATTTGCGGGACGAGGACCAGGTAGTGAGCTTAGAAAGTCTCACATCATACCTCATGCAACAGTTCAGGGAAATTGTCACCTGCGTTGAATGCTCTGCAGCAACACTATATCAGGTCCCTGAAGTTTTTTATTTTGCCCAAAAGGCAGTACTGCATCCAGTTGGTCCATTGTTTGATTATGAAAGACATGCTTTTACAGATCGATGTGTAAGGGCATTAAGAAGAATATTTGTTCTTTGCGATAATGATATGGATGGTGCCCTCAATGATGAAGAACTAAATGAATTTCAGGTTAAATGCTTCAATGAAGGATTGCAGCCAACTGAAGTAGCTAGAGTCAAAGCACTTGTAGAGCAGAATGTACCAGAAGGAGTCAACTCGCTTGGTCTTACTTTTCCAGGATTTACTTATGTGCATAATATATTTCTAAAGAAGGGTCGTACAGAGACATTTTGGGCTGTTCTGAGAAAGTTTGGATATGATAATGATTTAAAACTCCGGGATGATTTCCTTCCTGTTCCATCTAAGCAAGCTTCTGATCAGAGTGTGGAGCTTACAAGTGAAGCTGTTGAGTTTCTGAATGGTATCTTTCGATTGTTAGATACAGATAAAGATCGATCCCTACGACCATCTGAAGTTGATAAGCTATTTAATACTGCTCCAGAAAGTCCGTGGAATGATGCTCCGTATAAGGATGCAGCTGAGAAAACTGACATGGGTTACATACCTCTGAATGGATTTCTGTCTCAGTGGGCCCTTATGACATTACTTGATCCACCACATAGCTTGGCTAATTTGGTTTACATTGGATATAGTGGTAATCCTGCTTCAGCACTCCGTCTTACTCGAAAAAGATCAGTAGATCGCAAGAAGCAAAAAACAGAAAGAAGTGTGTTCCAATGCTATGTTTTTGGGTCTAAAAATGCTGGGAAATCTGCTTTGCTGCATTCGTTATTGGGAAGGCCCTTCTCAAGTAATTACACTCCTACAAAAGTTGAGCAGTATGCAGCAAATGTCGTTGAACTAATAGGGGGAACTAAGAAGACTCTCATATTGTGTGAGATACCAGAGGATGGAGTATTGAAATTATTGTCAAATCAGGATTGTTTGGCTGCATGTGATGTAGCTGTTTTTGTATATGACAGCTCAGATGAATATTCATGGAAGAAGTCCAGAGATTTGCTTGAAAAGGTTGTTAGACATGGAGAACTAACTGGTTACAGAGTTCCTTGCCTCCTCATTGCTGCTAAAGATGATTTAAATCCATACCCCAGGGCAGTAATAGATTCAGTTAAGGTCACTCAGGAATTGGGAATAGAGGCGCCTATTCATGTAAGTATGAAATCAGGTGATTCAAGTAATGTGTATAATAAGATTGTCAATGCCGCGGAACACCCTCATTTGAGCATTCCTGAAACTGAGATTGCAAGGAAAAGAAAGCAAAACCAGCAGCTTCTCCACCACTCTCTTATTTTTGCCTTAGTTGGAGCTGTTGTAACAGTTGTTGGTTTGAAAGTTTCTCGTGCACGGTCAGTGAAGAAAAACTTTTCTGCTTAG 1932 0.4198 MVGRSSFGDRKGVRIAVVGDGGTGKSTLIAAMASESFPDSVPPVLPPTRLPHNLYPDSVPITLIDTPSSLEKQGARNEELKIADAVVVTYACDEPVTFDRLGTYWLIELQRLEVKAPVVVVGCKMDLRDEDQVVSLESLTSYLMQQFREIVTCVECSAATLYQVPEVFYFAQKAVLHPVGPLFDYERHAFTDRCVRALRRIFVLCDNDMDGALNDEELNEFQVKCFNEGLQPTEVARVKALVEQNVPEGVNSLGLTFPGFTYVHNIFLKKGRTETFWAVLRKFGYDNDLKLRDDFLPVPSKQASDQSVELTSEAVEFLNGIFRLLDTDKDRSLRPSEVDKLFNTAPESPWNDAPYKDAAEKTDMGYIPLNGFLSQWALMTLLDPPHSLANLVYIGYSGNPASALRLTRKRSVDRKKQKTERSVFQCYVFGSKNAGKSALLHSLLGRPFSSNYTPTKVEQYAANVVELIGGTKKTLILCEIPEDGVLKLLSNQDCLAACDVAVFVYDSSDEYSWKKSRDLLEKVVRHGELTGYRVPCLLIAAKDDLNPYPRAVIDSVKVTQELGIEAPIHVSMKSGDSSNVYNKIVNAAEHPHLSIPETEIARKRKQNQQLLHHSLIFALVGAVVTVVGLKVSRARSVKKNFSA* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1708 643 ProSiteProfiles Miro domain profile. 421 590 IPR020860 GO:0003924|GO:0005525
Lan4g1708 643 SMART ras_sub_4 10 178 - -
Lan4g1708 643 ProSitePatterns EF-hand calcium-binding domain. 206 218 IPR018247 -
Lan4g1708 643 Gene3D - 9 180 IPR027417 -
Lan4g1708 643 Pfam EF hand associated 230 313 IPR013567 -
Lan4g1708 643 ProSiteProfiles EF-hand calcium-binding domain profile. 313 348 IPR002048 GO:0005509
Lan4g1708 643 ProSiteProfiles Miro domain profile. 10 177 IPR020860 GO:0003924|GO:0005525
Lan4g1708 643 PIRSF Miro 9 643 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0007005|GO:0031307
Lan4g1708 643 Pfam Ras family 428 550 IPR001806 GO:0003924|GO:0005525
Lan4g1708 643 Pfam Ras family 15 175 IPR001806 GO:0003924|GO:0005525
Lan4g1708 643 CDD Miro2 420 599 - -
Lan4g1708 643 SMART rab_sub_5 13 178 - -
Lan4g1708 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 210 IPR027417 -
Lan4g1708 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 595 IPR027417 -
Lan4g1708 643 SMART rho_sub_3 15 178 IPR001806 GO:0003924|GO:0005525
Lan4g1708 643 PANTHER RHO FAMILY GTPASE 1 494 IPR003578 GO:0005525|GO:0007264
Lan4g1708 643 Gene3D - 489 588 IPR027417 -
Lan4g1708 643 PRINTS Transforming protein P21 ras signature 13 34 - -
Lan4g1708 643 PRINTS Transforming protein P21 ras signature 114 127 - -
Lan4g1708 643 PRINTS Transforming protein P21 ras signature 153 175 - -
Lan4g1708 643 Gene3D - 185 289 - -
Lan4g1708 643 SUPERFAMILY EF-hand 181 377 IPR011992 -
Lan4g1708 643 Pfam EF hand associated 350 418 IPR013566 -
Lan4g1708 643 PANTHER MITOCHONDRIAL RHO GTPASE 1 494 - -
Lan4g1708 643 Gene3D - 291 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1708 Lan-Chr4 25774800 25782204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1708 3 640 EF-hand Containing Proteins AT3G63150 58.777 0.0 793
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1708 K07870 - gmx:100806983 1076.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0546 9 8180566 8185982 Lan4g1708 4 25774800 25782204 LSH
Lan9g0546 9 8180566 8185982 Lan4g1708 4 25774800 25782204 PCT
Lan4g1708 4 25774800 25782204 Lan9g0546 9 8180566 8185982 PCT