Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0525 ATGGCTGATGCACTTACAGAAGATCAGATTGCTGAATTTGGAGAAGTCTTTTGCCTCATTGACAAAGATTCTGATGGGTTCATCACTGTGAAAGAACTTGCTAACATTAATGAATCATTAGATGAGAGTCCAATCAAAGAAGAAATCCAAGATATGATTGGCGAAGTTGATATTGATTGGAATGAACGTATAGATTTTGAAGAGTTCTTGAATATTATGGTTAGGAAAATGAAGGAAAATATTGTTGAGGAGCTAAAAGAAGCATTCAAAGTATTTGATAGAGATCAAGATGGATTCATATCAGCCACTGAGCTGAAACATGTAATGATGAATTTGGGAGAGAGGCTGAGTGATGAAGAAGCTGAACAAATGATTAGAGAAGCAGATTTGGATGGTGATGGACAAGTTAGCTATGAAGAATTTGTAGTAGTAATGATGCATAATTAA 447 0.349 MADALTEDQIAEFGEVFCLIDKDSDGFITVKELANINESLDESPIKEEIQDMIGEVDIDWNERIDFEEFLNIMVRKMKENIVEELKEAFKVFDRDQDGFISATELKHVMMNLGERLSDEEAEQMIREADLDGDGQVSYEEFVVVMMHN* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0525 148 PANTHER CALMODULIN-LIKE PROTEIN 9 1 146 - -
Lan9g0525 148 ProSiteProfiles EF-hand calcium-binding domain profile. 116 148 IPR002048 GO:0005509
Lan9g0525 148 SUPERFAMILY EF-hand 2 146 IPR011992 -
Lan9g0525 148 Pfam EF-hand domain pair 15 73 IPR002048 GO:0005509
Lan9g0525 148 Pfam EF-hand domain pair 83 145 IPR002048 GO:0005509
Lan9g0525 148 CDD EFh 84 146 IPR002048 GO:0005509
Lan9g0525 148 ProSitePatterns EF-hand calcium-binding domain. 21 33 IPR018247 -
Lan9g0525 148 PANTHER CALCIUM BINDING PROTEIN 1 146 - -
Lan9g0525 148 ProSitePatterns EF-hand calcium-binding domain. 129 141 IPR018247 -
Lan9g0525 148 ProSiteProfiles EF-hand calcium-binding domain profile. 8 43 IPR002048 GO:0005509
Lan9g0525 148 ProSitePatterns EF-hand calcium-binding domain. 93 105 IPR018247 -
Lan9g0525 148 ProSiteProfiles EF-hand calcium-binding domain profile. 44 79 IPR002048 GO:0005509
Lan9g0525 148 Gene3D - 1 78 - -
Lan9g0525 148 ProSiteProfiles EF-hand calcium-binding domain profile. 80 115 IPR002048 GO:0005509
Lan9g0525 148 SMART efh_1 120 148 IPR002048 GO:0005509
Lan9g0525 148 SMART efh_1 84 112 IPR002048 GO:0005509
Lan9g0525 148 SMART efh_1 12 40 IPR002048 GO:0005509
Lan9g0525 148 SMART efh_1 48 76 IPR002048 GO:0005509
Lan9g0525 148 Gene3D - 79 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0525 Lan-Chr9 8067507 8068457 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0525 12 88 EF-hand Containing Proteins AT2G27030 36.364 3.16e-10 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0525 K02183 K13448 jre:108997761 238.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0525 9 8067507 8068457 Lan8g0700 8 9105998 9109543 PCT
Lan9g0525 9 8067507 8068457 Lan20g0173 20 1120423 1121613 PCT
Lan8g0700 8 9105998 9109543 Lan9g0525 9 8067507 8068457 PCT
Lan20g0173 20 1120423 1121613 Lan9g0525 9 8067507 8068457 PCT