Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0173 ATGGGAGATGCATTGAAAGACCAGATTGCTGAATTTCATGAAGCTTTTTGCCTTATTGACAAGGATTCTGATGGATTAATTTCTGTGGATGAACTATTAACCATTATCAAATCATTAGACGCAAATCCAATTAAGGAAGAAATCCAAGATATGATTGGTGAAGTTGATCTTGATGGAAAAGGGAGCATAGATTTTGAAGAGTTCTTGCATATTATGGGAATAAAAATGAAGGAAAGTCTGGTTGAGGAGCTAAAAGATGCATTCAAAGTATTTGACAGAGATAATGATGGATACATTTCAGCCACTGAGCTGAGACATGTAATGATGAAATTGGGAGAGAGGTTGACAGATGAAGAAGTTGAACAAATGATTAGAGAAGCAGATTTGGATGGGGATGGTCAAGTTAGTTATGAAGAATTTGCAAGGATAATGATCCTAAATTGA 444 0.3536 MGDALKDQIAEFHEAFCLIDKDSDGLISVDELLTIIKSLDANPIKEEIQDMIGEVDLDGKGSIDFEEFLHIMGIKMKESLVEELKDAFKVFDRDNDGYISATELRHVMMKLGERLTDEEVEQMIREADLDGDGQVSYEEFARIMILN* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0173 147 ProSitePatterns EF-hand calcium-binding domain. 128 140 IPR018247 -
Lan20g0173 147 ProSiteProfiles EF-hand calcium-binding domain profile. 115 147 IPR002048 GO:0005509
Lan20g0173 147 ProSiteProfiles EF-hand calcium-binding domain profile. 7 42 IPR002048 GO:0005509
Lan20g0173 147 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 5 146 - -
Lan20g0173 147 ProSiteProfiles EF-hand calcium-binding domain profile. 79 114 IPR002048 GO:0005509
Lan20g0173 147 SUPERFAMILY EF-hand 6 145 IPR011992 -
Lan20g0173 147 Pfam EF-hand domain pair 82 144 IPR002048 GO:0005509
Lan20g0173 147 Pfam EF-hand domain pair 11 72 IPR002048 GO:0005509
Lan20g0173 147 ProSitePatterns EF-hand calcium-binding domain. 20 32 IPR018247 -
Lan20g0173 147 ProSiteProfiles EF-hand calcium-binding domain profile. 43 78 IPR002048 GO:0005509
Lan20g0173 147 Gene3D - 78 147 - -
Lan20g0173 147 PRINTS Recoverin family signature 51 72 - -
Lan20g0173 147 PRINTS Recoverin family signature 75 94 - -
Lan20g0173 147 PRINTS Recoverin family signature 97 115 - -
Lan20g0173 147 Gene3D - 2 77 - -
Lan20g0173 147 PANTHER CALCIUM BINDING PROTEIN 5 146 - -
Lan20g0173 147 ProSitePatterns EF-hand calcium-binding domain. 92 104 IPR018247 -
Lan20g0173 147 CDD EFh 83 144 IPR002048 GO:0005509
Lan20g0173 147 SMART efh_1 47 75 IPR002048 GO:0005509
Lan20g0173 147 SMART efh_1 11 39 IPR002048 GO:0005509
Lan20g0173 147 SMART efh_1 83 111 IPR002048 GO:0005509
Lan20g0173 147 SMART efh_1 119 147 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0173 Lan-Chr20 1120423 1121613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0173 11 75 EF-hand Containing Proteins AT3G56800 43.077 8.37e-11 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0173 K02183 K13448 gmx:100527005 238.424
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0700 8 9105998 9109543 Lan20g0173 20 1120423 1121613 LSH
Lan9g0525 9 8067507 8068457 Lan20g0173 20 1120423 1121613 PCT
Lan20g0173 20 1120423 1121613 Lan9g0525 9 8067507 8068457 PCT