Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0430 ATGAATAATAATAATAATAATACTGCTTCGAATGGAGTGATGTCACCGGCGTCTTCATCGGCGGCGGCGGCGACGGTGGGGTTGAAGACGTATTTCAAAACTCCTGAAGGGAGGTATAAGCTTCAATACGAGAAGACTCATCCTTCCGCTCTTCTTCATTACGCTCATGGAAAAACCGTTACTCAGGTGACTCTGGCACATCTCAAGGACAAGCCAGCACCTTCAACCCCAACTGCATCGTCCTCTTCAAGTTTTAGTACTAGCAGTGGGGTACGGTCGGCAGCGGCTAGATTGTTGGGGGGAAGCAATGGAAGCCGAGCACTTAGTTTCGTTGGTGTCAATGGTAGCAGTAGCAAGAGCAATGGAGGAACCACCAGGATTGGTTCATTAGGTGCCTCAACTTCAAGTACTTCAATGGCAAATCCAAATTTTGACGGAAAAGGAACTTACTTGATCTTCAATGTTGGGGATGCTATTTTCATCAGTGACTTGAACTCTCATGACAAGGACCCCATAAAGTCTATTCACTTCAGTAATTCAAATCCTGTATGCCACGCATTTGATCAGGATGCTAAGGATGGACATGACTTGCTCATTGGCTTGAGCTCTGGTGATGTCTACTCGGTGTCACTGAGACAACAATTACAGGATGTTGGCAAAAAGCTTGTTGGAGCTCAGCATTACAACAAAGATGGTTCTGTCAATACCAGTCGCTGTAGTTGTATTGCTTGGGTGCCAGGAGGTGATGGTGCTTTTGCTGTTGCTCATGCTGATGGGAATTTGTACGTATATGAGAAGAACAAAGATAGTGCTGGTGATTCTTCATTCCCGGTTATCAAAGATCAAACTCAATTTTCTGTTTCCCATGCACGCTATAATAAGAGTAATCCAATAGCCAGATGGCATATATGCCAGGGTTCAATTAACAGTATTTCTTTCTCAAATGATGGGGCATACTTAGCAACTGTTGGAAGAGATGGTTCCTTACGAGTGTTTGATTACTCAAAGGAATTCCTTGTATGTGGTGGGAAAAGTTATTATGGGGCTTTGTTATGTTGTGCTTGGAGCATGGATGGAAAATATATTTTGACGGGAGGAGAAGATGATTTAGTTCAAGTTTGGAGCATGGAAGATCGCAAGGTTGTGGCATGGGGTGAGGGACATAACTCATGGGTAAGTGGAGTGGCTTTTGATTCATATTGGACATCACCAAATTCAGGCGAGAATGGAGAAACCATTATGTATCGGTTTGGTTCCGTTGGTCAGGATACACAATTGCTTCTATGGGACCTGGAAATGGACGAGATTGTAGTGTCGTTGCGGCGTCCTCCTGGTGGATCCCCGACTTACAGTACTGGAAGCCAGTCATCCCTCTGGGACAGTGTTGCCCCATTGGGTACCTTGCAACCTGCTCCAAGCATGCGTGATGTTCCAAAAATCTCTCCATCGGTTGCTCATCATGCTTACACCGAACCACTCTCTGGCTTGATATTTACCCAGGAATCTGTACTTACTGCATGCCGGGAGGGGCACATAAAAGTCTGGGTGAGACCCGACATTGTCGAGAGCGAATCAATCAACTCTGAAGCCTTGTTAGCTACCAGCCTTAAGGATAAGCCTTCACTATTAAGCAAGATCAGCAATTCTAGCTACAAATAG 1659 0.4509 MNNNNNNTASNGVMSPASSSAAAATVGLKTYFKTPEGRYKLQYEKTHPSALLHYAHGKTVTQVTLAHLKDKPAPSTPTASSSSSFSTSSGVRSAAARLLGGSNGSRALSFVGVNGSSSKSNGGTTRIGSLGASTSSTSMANPNFDGKGTYLIFNVGDAIFISDLNSHDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLSSGDVYSVSLRQQLQDVGKKLVGAQHYNKDGSVNTSRCSCIAWVPGGDGAFAVAHADGNLYVYEKNKDSAGDSSFPVIKDQTQFSVSHARYNKSNPIARWHICQGSINSISFSNDGAYLATVGRDGSLRVFDYSKEFLVCGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWTSPNSGENGETIMYRFGSVGQDTQLLLWDLEMDEIVVSLRRPPGGSPTYSTGSQSSLWDSVAPLGTLQPAPSMRDVPKISPSVAHHAYTEPLSGLIFTQESVLTACREGHIKVWVRPDIVESESINSEALLATSLKDKPSLLSKISNSSYK* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0430 552 SMART WD40_4 479 516 IPR001680 GO:0005515
Lan9g0430 552 SMART WD40_4 336 375 IPR001680 GO:0005515
Lan9g0430 552 SMART WD40_4 294 333 IPR001680 GO:0005515
Lan9g0430 552 SMART WD40_4 219 265 IPR001680 GO:0005515
Lan9g0430 552 SMART WD40_4 378 430 IPR001680 GO:0005515
Lan9g0430 552 PANTHER LOW QUALITY PROTEIN: WD REPEAT-CONTAINING PROTEIN 20-LIKE 3 550 - -
Lan9g0430 552 Pfam WD domain, G-beta repeat 305 333 IPR001680 GO:0005515
Lan9g0430 552 Pfam WD domain, G-beta repeat 350 375 IPR001680 GO:0005515
Lan9g0430 552 MobiDBLite consensus disorder prediction 113 136 - -
Lan9g0430 552 ProSiteProfiles Trp-Asp (WD) repeats profile. 343 384 IPR001680 GO:0005515
Lan9g0430 552 PANTHER WD REPEAT PROTEIN 3 550 - -
Lan9g0430 552 Gene3D - 18 523 IPR015943 GO:0005515
Lan9g0430 552 SUPERFAMILY WD40 repeat-like 158 515 IPR036322 GO:0005515
Lan9g0430 552 ProSiteProfiles Trp-Asp (WD) repeats profile. 308 333 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0430 Lan-Chr9 6207434 6212675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0430 310 437 Miscellaneous Gene Families AT5G08390 22.656 4.91e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0430 K24741 - gmx:100782580 946.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0430 9 6207434 6212675 Lan5g1179 5 25841706 25846719 LSH