Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1179 ATGACGACGGTCGCGAATAATAGTGGTTCCAACGGTGTTATGTCACCGGCGTCTTCTACGGCGGCGGCGACAGCTCAGTCTCCGGCGGGGTTGAAAACGCATTTCAAAACCCCTGAAGGAAGGTATAAGCTTCAATACGAGAAGACTCATCCTTCTTCTCTTCTTCATTATGCTCATGGAAAAACCGTTACTCAGGTGACTCTAGCACATCTCAAGGACAAGCCAGCACCATCAACTCCAACTGCATCGTCCACTTCAAGTTTTAGTACCAGCAGTGGGGTACGGTCAGCAGCAGCTAGGTTGTTGGGAGGAAGCAATGGAAGCCGGGCACTTAGTTTTGTTGGTGTCAATGGTAGCAGCAGCAAGAGCAATGGAGGAAGCATTAGGAATGGTTCAATGGCATCCTCAACTTCAAGTAGTTCAATGGCAAATCCAAATTTTGATGGAAAAGGAACCTACTTGATCTTCAATGTCGGGGATGCAATTTTCATCAGTGACTTGAACTCTCATGATAAGGACCCCATAAAGTCTATTAACTTTGGTAATTCAAATCCTGTATGCCATGCGTTTGATCAAGATGCTAAGGATGGGCATGATTTGCTCATTGGCTTGAGCTCTGGTGATGTCTACTCAGTGTCACTGAGACAGCAATTACAGGATGTTGGCAAAAAGCTTGTTGGAGCCCAGCATTACAACAAAGATGGTTCTGTCAATACCAGTCGCTGTAGTTGTATCACTTGGGTGCCAGGAGGTGATGGTGCATTTGTTGTTGCTCATGCTGATGGGAATTTGTACGTATATGAAAAGAACAAAGACGGTGCTGGTGATTCTTCATTTCCGGTTATCAAAGATCAAACTCAGTTTTCTGTTTCCCATTCACGCTATAGTAAGAGTAATCCAGTAGCCAGATGGCATATATGCCAGGGTTCAATTAACAGTATTTCTTTCTCAAACGATGGGGCATACTTGGCAACGGTTGGAAGAGATGGTTACTTACGAGTGTTTGATTACTCAAAAGAACTCCTTGTATGTGGTGGAAAAAGTTATTATGGGGCTTTGTTGTGTTGTGCTTGGAGCATGGATGGAAAATATATTTTGACTGGAGGAGAAGATGATTTAGTTCAAGTTTGGAGCATGGAAGATCGCAAGGTTGTGGCGTGGGGTGAGGGACATAGCTCATGGGTAAGTGGAGTGGCTTTTGATTCATACTGGACATCGCCAAATTCCAGTGACAATGGAGAAACCATTATGTATCGCTTTGGCTCCGTTGGTCAGGATACGCAATTGCTTCTATGGGACCTGGAAATGGATGAGATTGTCGTGCCCTTGCGGCGTCCCCCGGGTGGATCCCCGACTTACAGTACCGGAAGCCAGTCATCCCACTGGGACAATGTTGTCCCATTGGGTACCTTGCAACCTGCTCCAAGTATGCGTGATGTTCCAAAAGTCTCTCCATTGGTTACTCACCGTGTGCATACCGAACCACTCTCTGGCTTGATATTTACCCAGGAATCTGTACTCACTGCATGCCGGGAGGGTCACATAAAAGTCTGGGTGAGACCCGAAGTAGTCGTGAGCCAATCAAGCAACTCCGAAACCTTGTTAGCTACCAGCCTCAAGGAGAAGCCTTCACTGTCAAGCAAGATCACCAATTCTAGCTACAAATGA 1668 0.4604 MTTVANNSGSNGVMSPASSTAAATAQSPAGLKTHFKTPEGRYKLQYEKTHPSSLLHYAHGKTVTQVTLAHLKDKPAPSTPTASSTSSFSTSSGVRSAAARLLGGSNGSRALSFVGVNGSSSKSNGGSIRNGSMASSTSSSSMANPNFDGKGTYLIFNVGDAIFISDLNSHDKDPIKSINFGNSNPVCHAFDQDAKDGHDLLIGLSSGDVYSVSLRQQLQDVGKKLVGAQHYNKDGSVNTSRCSCITWVPGGDGAFVVAHADGNLYVYEKNKDGAGDSSFPVIKDQTQFSVSHSRYSKSNPVARWHICQGSINSISFSNDGAYLATVGRDGYLRVFDYSKELLVCGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHSSWVSGVAFDSYWTSPNSSDNGETIMYRFGSVGQDTQLLLWDLEMDEIVVPLRRPPGGSPTYSTGSQSSHWDNVVPLGTLQPAPSMRDVPKVSPLVTHRVHTEPLSGLIFTQESVLTACREGHIKVWVRPEVVVSQSSNSETLLATSLKEKPSLSSKITNSSYK* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1179 555 Gene3D - 20 528 IPR015943 GO:0005515
Lan5g1179 555 MobiDBLite consensus disorder prediction 1 35 - -
Lan5g1179 555 PANTHER WD REPEAT PROTEIN 5 553 - -
Lan5g1179 555 MobiDBLite consensus disorder prediction 117 142 - -
Lan5g1179 555 SUPERFAMILY WD40 repeat-like 160 518 IPR036322 GO:0005515
Lan5g1179 555 Pfam WD domain, G-beta repeat 353 378 IPR001680 GO:0005515
Lan5g1179 555 Pfam WD domain, G-beta repeat 308 336 IPR001680 GO:0005515
Lan5g1179 555 ProSiteProfiles Trp-Asp (WD) repeats profile. 346 387 IPR001680 GO:0005515
Lan5g1179 555 MobiDBLite consensus disorder prediction 1 31 - -
Lan5g1179 555 SMART WD40_4 297 336 IPR001680 GO:0005515
Lan5g1179 555 SMART WD40_4 222 268 IPR001680 GO:0005515
Lan5g1179 555 SMART WD40_4 339 378 IPR001680 GO:0005515
Lan5g1179 555 SMART WD40_4 482 519 IPR001680 GO:0005515
Lan5g1179 555 SMART WD40_4 381 433 IPR001680 GO:0005515
Lan5g1179 555 PANTHER LOW QUALITY PROTEIN: WD REPEAT-CONTAINING PROTEIN 20-LIKE 5 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1179 Lan-Chr5 25841706 25846719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1179 313 440 Miscellaneous Gene Families AT5G08390 21.875 1.07e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1179 K24741 - gmx:100782580 950.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1179 5 25841706 25846719 Lan5g1179 5 25841706 25846719 ECH
Lan9g0430 9 6207434 6212675 Lan5g1179 5 25841706 25846719 LSH