Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0405 ATGGTGAAAGCCTACCTCCGATACGAGCCAGCGGCGTCGTTCGGCGTAATCGCCTCCGTTGAATCGAACATCACATACGACAGCTCTGGCAAACACCTCCTCTCTCCGGCGCTGGAGAAAATCGGCGTGTGGCACGTGCGTCAAGGACTTTGCACCAAAACCCTAACTCCTTCACCTTTCTCTCGCGGACCTTCACTAGCTGTTACTTCCATTGTTTCCTCTCCTTCGTCGCTGATAGCTGCTGGTTATGCTGATGGAAGCATAAGGATTTGGGACTCTGATGCAGGAACGTGTGAGACTACATTGAATGGACACAAGGGAGCTGTTACTGCTCTTCGCTACAACGAGAATGGTTCCTTACTTGCTTCTGGAAGCAAGGATAACGATGTCATTTTATGGGACGTGGTTGGCGAGACTGGACTCTTTCGCCTTCGTGGCCATCGTGATCAGGTGACTGATGTTGTTTTTGTGAATTCTGGGAAGAAACTTGTTAGTTCCTCCAAAGACAAGTTTTTGAGAGTGTGGGATCTTGATACTCAGCATTGTATGCAAATCGTAGGTGGCCATCATACTGAAATATGGTCCATAGATGTTGATCCCAATGAAAGATACCTGGTCACTGGTTCTGCCGACAAGGAACTTCGTTTTTACTCAATCAAGCATGAGTCTTCTGATGGGCAATCTGTGAATGGAAACAATGCAGTTGTAAGTGGTGATTCTTCTGTTAAAGATAAATGGGAAGTTTTGAGGCAGTTTGGTGAAATTCAGCGGCAAGCCAAGGAAAGAGTTGCAACAGTGCAGTTTAACAAGTCTGGGAATCTGCTAGCTTGTCAAGTAGCAGGGAAGACGGCAGAAGTATACCGTGTATTGGATGATGCCGATGCAAAGCGTAAGGCGAAACGCAGGGTTCACCGTAGGAAAGAGAAAAAACATGGCAAAGATGTTTTGGAGGGGACTGAAAATGGGGACAAGAATAGTGAAAACAAGGGAGATAATTCTTCCGTGGCTCATGGCCCTGCAGAAACAAGCAACCCTGCAATTACTGTGCCTGATGTTTTTAAGCTGCTGCATACTATTAGAGCTAGCAAAAAGATTTGCTCCATTTCTTTCTGTCCAATCACTCCAAAGAATTCACTGGCTACTTTAGCATTGTCATTGAACAATAATCTGCTTGAGTTTTACTCCATTGAAAGTGGTGAAACCTCAAAAACACTTGCTGTTGAGCTTCAAGGGCATCGTTCTGATGTTAGAAGTGTCACACTTAGTTCGGATAACACTCTTCTGATGTCAACCAGTCATAATGCAGTAAAGATTTGGAATCCAAGCACCGGTTCTTGCCTAAGGACTGTTGATTCTGGGTATGGACTGTGCAGTTTAATTCTTCCCTCTAACAAGTATGGACTTGTTGGAACTAAAGACGGAACCTTAGAAATTATCGACATTGGAAGTGGCACTTGTGTTGAAGTAGTGGAAGCTCATGGTGGCTCTGTTCGCTCAATTGCTGCCCTACCAGATAGAAATGGTTTTGTCACAGGAAGTGCAGATCATGATGTTAAGTTTTGGGAGTACCAAATTAAGCAAAAACCTGGTGAAGCTACTAAGCAGCTCAGTGTGTCAAATGTTGGTACCATGAAAATGAATGATGATGTTCTTGTGGTTGCAATAAGCCCTGATGCTAAATATATTGCTGTTGCATTGTTGGATAGCACTGTGAAGGTTCACTTTGTTGATACATTCAAATTCTTCCTTACATTATATGGCCACAAGCTGCCTGTTCTTTGTATGGATATCTCATCAGATGGAGATTTAATTGTGACTGGCTCTGCAGATAAAAATATAAAGATTTGGGGTTTGGATTTTGGTGACTGTCATAAGTCCATTTTTGCACATGCTGACAGTGTTATGGGAGTGCAATTTGTTCCCAAGACACACTATGTATTTAGTGTTGGAAAAGATCGGTTGGTAAAATATTGGGATGCTGATAAATTTGAGCATCTGTTAACTCTCGAAGGACATCATGCAGATATTTGGTGTCTTACGATCAGTAATCGTGGTGATTTTATTGTCACTGGATCTCATGACCGTTCCATCCGCCGCTGGGATCGTACTGAAGAACAGTTTTTCATTGAGGAAGAAAAGGAGAAAAGGTTGGAGGAAATGTTTGAGGCTGATCTTGACAATGCTTTTGAAAACAAGCATGTACCAAAGGAAGAAATACCAGAGGAGGGAGCTGTGGCTTTAGCTGGGAAAAAAACTCAGGAAACCCTTACTGCAACGGACTTAGTTATTGAGAGATTAGACATAGCAGAAGCTGAAAAACAGCGTATTGCTGAGAATCAGGAGGAGAAAAGTAACAGAAGTGTTGCTGCTTTCCAAGCAAATCCACTTATGAATGGGCTTTCACCTTCAGATTATGTTCTAAGTGCATTTTCAGATGTTCACTCCAATGATCTTGAGCAAACATTATTGGCTTTGCCATTTTCTGATGCTTTGAAGCTTCTGTCGTACTTGAAAGAATGGACTTCATATTCTGACAAGATTGAGCTTGTTTGCCGCATAGGAACTCTGCTATTGCAGACACATTACAATCAGCTGCTTTCTACGCCAGCTGCCAGACCTGTCTTGACTGCTTTCAGTGACATATTTTATGAACGTGTCAAGGGATGGAAAGATATCTTTGGTTTTAACCTTGCAGCCATGGATCATATCCAGCAAATGATGGCTTCAAGATCAGATGCCCTCTTCAGTGATGCAAGATCTAAACTTCTACAAATACGTGCTCAACAATCAAAACGTTTAGAAGAAAGATCTGATTTGGGAGAAGCGAAGCAGAAGAAGAAGCCGAAGACAACAACGGTGTAG 2862 0.4277 MVKAYLRYEPAASFGVIASVESNITYDSSGKHLLSPALEKIGVWHVRQGLCTKTLTPSPFSRGPSLAVTSIVSSPSSLIAAGYADGSIRIWDSDAGTCETTLNGHKGAVTALRYNENGSLLASGSKDNDVILWDVVGETGLFRLRGHRDQVTDVVFVNSGKKLVSSSKDKFLRVWDLDTQHCMQIVGGHHTEIWSIDVDPNERYLVTGSADKELRFYSIKHESSDGQSVNGNNAVVSGDSSVKDKWEVLRQFGEIQRQAKERVATVQFNKSGNLLACQVAGKTAEVYRVLDDADAKRKAKRRVHRRKEKKHGKDVLEGTENGDKNSENKGDNSSVAHGPAETSNPAITVPDVFKLLHTIRASKKICSISFCPITPKNSLATLALSLNNNLLEFYSIESGETSKTLAVELQGHRSDVRSVTLSSDNTLLMSTSHNAVKIWNPSTGSCLRTVDSGYGLCSLILPSNKYGLVGTKDGTLEIIDIGSGTCVEVVEAHGGSVRSIAALPDRNGFVTGSADHDVKFWEYQIKQKPGEATKQLSVSNVGTMKMNDDVLVVAISPDAKYIAVALLDSTVKVHFVDTFKFFLTLYGHKLPVLCMDISSDGDLIVTGSADKNIKIWGLDFGDCHKSIFAHADSVMGVQFVPKTHYVFSVGKDRLVKYWDADKFEHLLTLEGHHADIWCLTISNRGDFIVTGSHDRSIRRWDRTEEQFFIEEEKEKRLEEMFEADLDNAFENKHVPKEEIPEEGAVALAGKKTQETLTATDLVIERLDIAEAEKQRIAENQEEKSNRSVAAFQANPLMNGLSPSDYVLSAFSDVHSNDLEQTLLALPFSDALKLLSYLKEWTSYSDKIELVCRIGTLLLQTHYNQLLSTPAARPVLTAFSDIFYERVKGWKDIFGFNLAAMDHIQQMMASRSDALFSDARSKLLQIRAQQSKRLEERSDLGEAKQKKKPKTTTV* 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0405 953 ProSiteProfiles Trp-Asp (WD) repeats profile. 669 701 IPR001680 GO:0005515
Lan9g0405 953 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 144 179 - -
Lan9g0405 953 ProSiteProfiles Trp-Asp (WD) repeats profile. 585 626 IPR001680 GO:0005515
Lan9g0405 953 PANTHER WD REPEAT-CONTAINING PROTEIN 3 1 949 - -
Lan9g0405 953 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 669 701 - -
Lan9g0405 953 PRINTS G protein beta WD-40 repeat signature 121 135 IPR020472 -
Lan9g0405 953 PRINTS G protein beta WD-40 repeat signature 163 177 IPR020472 -
Lan9g0405 953 PRINTS G protein beta WD-40 repeat signature 604 618 IPR020472 -
Lan9g0405 953 Pfam WD domain, G-beta repeat 408 440 IPR001680 GO:0005515
Lan9g0405 953 Pfam WD domain, G-beta repeat 96 134 IPR001680 GO:0005515
Lan9g0405 953 Pfam WD domain, G-beta repeat 61 92 IPR001680 GO:0005515
Lan9g0405 953 Pfam WD domain, G-beta repeat 664 701 IPR001680 GO:0005515
Lan9g0405 953 Pfam WD domain, G-beta repeat 583 616 IPR001680 GO:0005515
Lan9g0405 953 Pfam WD domain, G-beta repeat 181 217 IPR001680 GO:0005515
Lan9g0405 953 Pfam WD domain, G-beta repeat 142 176 IPR001680 GO:0005515
Lan9g0405 953 Pfam WD domain, G-beta repeat 484 521 IPR001680 GO:0005515
Lan9g0405 953 Gene3D - 140 315 IPR015943 GO:0005515
Lan9g0405 953 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 101 IPR001680 GO:0005515
Lan9g0405 953 MobiDBLite consensus disorder prediction 930 953 - -
Lan9g0405 953 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 585 619 - -
Lan9g0405 953 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 490 522 - -
Lan9g0405 953 Gene3D - 452 654 IPR015943 GO:0005515
Lan9g0405 953 ProSiteProfiles Trp-Asp (WD) repeats profile. 409 449 IPR001680 GO:0005515
Lan9g0405 953 ProSiteProfiles Trp-Asp (WD) repeats profile. 490 522 IPR001680 GO:0005515
Lan9g0405 953 MobiDBLite consensus disorder prediction 297 343 - -
Lan9g0405 953 Gene3D - 655 720 IPR015943 GO:0005515
Lan9g0405 953 SMART WD40_4 620 659 IPR001680 GO:0005515
Lan9g0405 953 SMART WD40_4 578 617 IPR001680 GO:0005515
Lan9g0405 953 SMART WD40_4 137 176 IPR001680 GO:0005515
Lan9g0405 953 SMART WD40_4 402 440 IPR001680 GO:0005515
Lan9g0405 953 SMART WD40_4 537 575 IPR001680 GO:0005515
Lan9g0405 953 SMART WD40_4 95 134 IPR001680 GO:0005515
Lan9g0405 953 SMART WD40_4 483 522 IPR001680 GO:0005515
Lan9g0405 953 SMART WD40_4 48 92 IPR001680 GO:0005515
Lan9g0405 953 SMART WD40_4 662 701 IPR001680 GO:0005515
Lan9g0405 953 SMART WD40_4 443 480 IPR001680 GO:0005515
Lan9g0405 953 SMART WD40_4 179 218 IPR001680 GO:0005515
Lan9g0405 953 Coils Coil 763 786 - -
Lan9g0405 953 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 627 659 - -
Lan9g0405 953 MobiDBLite consensus disorder prediction 310 327 - -
Lan9g0405 953 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 186 220 - -
Lan9g0405 953 ProSiteProfiles Trp-Asp (WD) repeats profile. 627 668 IPR001680 GO:0005515
Lan9g0405 953 ProSiteProfiles Trp-Asp (WD) repeats profile. 102 135 IPR001680 GO:0005515
Lan9g0405 953 ProSitePatterns Trp-Asp (WD) repeats signature. 121 135 IPR019775 -
Lan9g0405 953 Pfam Dip2/Utp12 Family 804 904 IPR007148 -
Lan9g0405 953 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 102 135 - -
Lan9g0405 953 CDD WD40 98 522 - -
Lan9g0405 953 ProSiteProfiles Trp-Asp (WD) repeats profile. 144 185 IPR001680 GO:0005515
Lan9g0405 953 SUPERFAMILY Nucleoporin domain 354 706 - -
Lan9g0405 953 CDD WD40 405 701 - -
Lan9g0405 953 Gene3D - 23 139 IPR015943 GO:0005515
Lan9g0405 953 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 220 IPR001680 GO:0005515
Lan9g0405 953 ProSitePatterns Trp-Asp (WD) repeats signature. 163 177 IPR019775 -
Lan9g0405 953 PANTHER WD REPEAT CONTAINING PROTEIN 3 WDR3 1 949 - -
Lan9g0405 953 SUPERFAMILY WD40 repeat-like 26 272 IPR036322 GO:0005515
Lan9g0405 953 Gene3D - 341 451 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0405 Lan-Chr9 5880509 5889852 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0405 582 710 Miscellaneous Gene Families AT5G08390 27.132 2.05e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0405 K14556 - gmx:100775810 1667.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0405 9 5880509 5889852 Lan19g0418 19 5491073 5511367 LSH