Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0418 ATGGTGAAGGCCTACCTCCGATACGAGCCGGCGGCTTCATTCGGTGTAATCGCTTCCGTTGAATCCAACATCACTTACGACAGCTCCGGCAAACACCTCCTCTCTCCGGCACTCGAGAAAATCGGCGTGTGGCACGTGCGGCAGGGTCTCTGCACCAAAACCCTAACCCCTTCCCCTTCATCTCGCGGTCCCTCACTCGCTGTTACCTCCATCGTATCCTCGCCTTCATCCTTGATAGCTGCTGGATATGCTGATGGAAGCATAAGGATTTGGGACTCTGACACAGGAACTTGTGAGACTACTTTGAATGGACATAAGGGAGCTGTTACTGCTCTTCGTTACAATGAAAATGGTTCCTTACTTGCTTCTGGAAGCAAGGATAATGATATCATTTTATGGGATGTGGTTGGCGAGACTGGGCTCTTTCGCCTTCGTGGTCATCGCGATCAGGTGACTGATGTTGTTTTTGTGAGTTCTGGGAAGGAACTTATTAGTTCCTCCAAAGACAAGTTTTTGAGAGTGTGGGATCTTGATACCCAACACTGTATGCAAATTGTTGGTGGCCATCATAGTGAAATATGGTCTATAGATGTTGATCGGGATGAAAGGTACCTGGTCACAGGGTCTGCGGACAAGGAACTTCGTTTTTACTCAATTAAGCATGAATCTGTGAATGGAAGCAGTGCAGTTGGCAGTTCAGGTTCTTCAGTTCAAGACAAATGGGAAGTTTTGAGGCAGTTTGGCGAAATTCATCGTCAAAGCAAGGATAGAGTTGCAACAGTCCAGTTTAACAAGTCTGGGAATCTGCTAGCTTGTCAAGTAGCGGGGAAGACAGTAGAAATTTACCGTGTATTGGACGATGCTGAAGCAAAGCGTAAGGCGAAACGCAGGGTTCACCGCAAGAAAGAGAAGAAACATAGCAAAGAGGTTTTGGAGGAGGGGACTGAAAATGGAGACAAGAATAATGAAAACAAGGGAGATAATTCTTTCGTGGCTCATGGCCCCACAGAAACAAGTAGCCCTACAGTTACTGTGCCTGATGTTTTTAAGCTGCTGCATACTATTAGAGCTAGCAAAAAGATATGCTCCATTTCTTTCTGTCCAATCACTCCAAAGAATTCTCTGGCTAGTTTAGCATTGTCCCTGAACAATAATTTACTTGAGTTTTACTCCATTGAAAATGGTGAAGCCTCTAAAACACTTGCTATTGAGCTTCAAGGGCATCGTTCTGATGTTAGAAGTGTCTCACTCAGTTCGGATAACACTCTTCTGATGTCAACTAGTCACAATGCAGTGAAGATATGGAATCCCAGCACAGGTTCTTGCCTAAGGACTGTTGATTCTGGCTATGGACTGTGCAGTTTAATTCTTCCCTCTAACAAGTATGGACTTGTTGGAACCAAAGATGGGACCTTAGAAATTATTGACATTGGAAGTGGTACTTGTGTTGAAGTAGTGGAAGCTCATGGTGGCTCTGTTCGCTCAATTGCTGCCCTACCAGATAGAAATGGTTTTGTAACAGGAAGTGCAGATCATGATGTTAAGTTTTGGGAGTACCAAATTAAGCAAAAACCTGGCCAAGCTACTAAGCAGCTCAGTGTGTCAAATGTTGGTTCTATGAAAATGAATGATGATGTTCTTGTGGTTGCAATAAGCCCTGATGCTAAATATATTGCGGTTGCATTGTTGGATAGCACTGTGAAGGTTCACTTTGTAGACACATTCAAATTCTTCCTTACATTATATGGCCACAAGCTGCCTGTTCTTTGTATGGATATCTCATCAGACGGTGATTTAATTGTGACTGGCTCTGCAGATAAAAATATAAAGATTTGGGGTTTGGATTTTGGTGACTGCCATAAGTCCATTTTTGCACATGCTGACAGTGTTATGGGAGTGCAATTTGTACCTAAGACACACTATGTGTTTAGTGTTGGAAAAGATCGGCTGGTAAAATATTGGGATGCTGATAAATTTGAGCATCTTTTAACTCTCGAAGGACATCATGCAGATATTTGGTGTCTTACAATCAGTAATCGTGGTGATTTTATTGTAAGTGGATCTCATGACCGTTCCATCCGCCGCTGGGATCGTACTGAAGAGCAGTTTCTCATTGAGGAAGAAAAGGAGAAAAGGCTGGAGGAAATGTTTGAGGCTGATCTTGACAATGCTTTTGAAAACAAGCATATACCAAAGGAAGAAATACCAGAGGAGGGAGCTGTGGCTTTAGCTGGGAAAAAAACCCAGGAAACCCTTACTGCAACTGACTTAGTTATTGAGAGATTAGACATAGCAGAAGCTGAAAATCAGCGTATTGCTGAGCATCAGGAGGAGAAAAGTAACAAAAATAGTACTGCTTTCCAAGCAAATCCACTTATGAATGGGCTTTCACCTTCGGATTATGTTCTAAGTGCATTTTCAGATGTGCACTCCAGTGATCTAGAGCAAACATTATTGGCTTTGCCATTTTCTGATGCTTTGAAGCTTCTGTCTTATTTGAAGGATTGGACTAAATATTCTGATAAGATTGAGCTTGTTTGCCGGATAGGAACATTGCTGTTGCAGACACATTACAATCAGCTGCTTTCCACGCCAGCTGCCAGACCTGTTCTGACGGCCTTCAGTGACATATTTTATGAACGTGTCAAGGGTTGGAAAGATATCTTTGGTTTTAACCTTGCAGCCATGGATCACATCCAGCAAATGATGGCTTCAAGATCAGATGCTCTTTTTCACGATGCGAGATCTAAATTGTTAGAGATTCGTGCTCAACAGTCAAAACGTTTAGAAGAAAGATCTGATATGGGAGAAGTGAAGCGGAAGAAGAAGCAGATGACGACAACGACATAG 2850 0.4291 MVKAYLRYEPAASFGVIASVESNITYDSSGKHLLSPALEKIGVWHVRQGLCTKTLTPSPSSRGPSLAVTSIVSSPSSLIAAGYADGSIRIWDSDTGTCETTLNGHKGAVTALRYNENGSLLASGSKDNDIILWDVVGETGLFRLRGHRDQVTDVVFVSSGKELISSSKDKFLRVWDLDTQHCMQIVGGHHSEIWSIDVDRDERYLVTGSADKELRFYSIKHESVNGSSAVGSSGSSVQDKWEVLRQFGEIHRQSKDRVATVQFNKSGNLLACQVAGKTVEIYRVLDDAEAKRKAKRRVHRKKEKKHSKEVLEEGTENGDKNNENKGDNSFVAHGPTETSSPTVTVPDVFKLLHTIRASKKICSISFCPITPKNSLASLALSLNNNLLEFYSIENGEASKTLAIELQGHRSDVRSVSLSSDNTLLMSTSHNAVKIWNPSTGSCLRTVDSGYGLCSLILPSNKYGLVGTKDGTLEIIDIGSGTCVEVVEAHGGSVRSIAALPDRNGFVTGSADHDVKFWEYQIKQKPGQATKQLSVSNVGSMKMNDDVLVVAISPDAKYIAVALLDSTVKVHFVDTFKFFLTLYGHKLPVLCMDISSDGDLIVTGSADKNIKIWGLDFGDCHKSIFAHADSVMGVQFVPKTHYVFSVGKDRLVKYWDADKFEHLLTLEGHHADIWCLTISNRGDFIVSGSHDRSIRRWDRTEEQFLIEEEKEKRLEEMFEADLDNAFENKHIPKEEIPEEGAVALAGKKTQETLTATDLVIERLDIAEAENQRIAEHQEEKSNKNSTAFQANPLMNGLSPSDYVLSAFSDVHSSDLEQTLLALPFSDALKLLSYLKDWTKYSDKIELVCRIGTLLLQTHYNQLLSTPAARPVLTAFSDIFYERVKGWKDIFGFNLAAMDHIQQMMASRSDALFHDARSKLLEIRAQQSKRLEERSDMGEVKRKKKQMTTTT* 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0418 949 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 581 615 - -
Lan19g0418 949 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 102 135 - -
Lan19g0418 949 SUPERFAMILY WD40 repeat-like 30 286 IPR036322 GO:0005515
Lan19g0418 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 623 664 IPR001680 GO:0005515
Lan19g0418 949 ProSitePatterns Trp-Asp (WD) repeats signature. 79 93 IPR019775 -
Lan19g0418 949 Gene3D - 13 220 IPR015943 GO:0005515
Lan19g0418 949 CDD WD40 401 697 - -
Lan19g0418 949 MobiDBLite consensus disorder prediction 324 339 - -
Lan19g0418 949 Gene3D - 647 712 IPR015943 GO:0005515
Lan19g0418 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 665 706 IPR001680 GO:0005515
Lan19g0418 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 144 185 IPR001680 GO:0005515
Lan19g0418 949 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 665 697 - -
Lan19g0418 949 Gene3D - 448 646 IPR015943 GO:0005515
Lan19g0418 949 Pfam Dip2/Utp12 Family 800 900 IPR007148 -
Lan19g0418 949 PANTHER WD REPEAT CONTAINING PROTEIN 3 WDR3 1 944 - -
Lan19g0418 949 CDD WD40 98 518 - -
Lan19g0418 949 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 405 436 - -
Lan19g0418 949 Coils Coil 765 785 - -
Lan19g0418 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 581 622 IPR001680 GO:0005515
Lan19g0418 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 405 445 IPR001680 GO:0005515
Lan19g0418 949 MobiDBLite consensus disorder prediction 930 949 - -
Lan19g0418 949 ProSitePatterns Trp-Asp (WD) repeats signature. 121 135 IPR019775 -
Lan19g0418 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 101 IPR001680 GO:0005515
Lan19g0418 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 227 IPR001680 GO:0005515
Lan19g0418 949 PRINTS G protein beta WD-40 repeat signature 121 135 IPR020472 -
Lan19g0418 949 PRINTS G protein beta WD-40 repeat signature 600 614 IPR020472 -
Lan19g0418 949 PRINTS G protein beta WD-40 repeat signature 684 698 IPR020472 -
Lan19g0418 949 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 144 179 - -
Lan19g0418 949 PANTHER WD REPEAT-CONTAINING PROTEIN 3 1 944 - -
Lan19g0418 949 MobiDBLite consensus disorder prediction 305 323 - -
Lan19g0418 949 MobiDBLite consensus disorder prediction 292 339 - -
Lan19g0418 949 Pfam WD domain, G-beta repeat 96 134 IPR001680 GO:0005515
Lan19g0418 949 Pfam WD domain, G-beta repeat 404 436 IPR001680 GO:0005515
Lan19g0418 949 Pfam WD domain, G-beta repeat 660 697 IPR001680 GO:0005515
Lan19g0418 949 Pfam WD domain, G-beta repeat 480 517 IPR001680 GO:0005515
Lan19g0418 949 Pfam WD domain, G-beta repeat 51 92 IPR001680 GO:0005515
Lan19g0418 949 Pfam WD domain, G-beta repeat 579 612 IPR001680 GO:0005515
Lan19g0418 949 Pfam WD domain, G-beta repeat 181 217 IPR001680 GO:0005515
Lan19g0418 949 Pfam WD domain, G-beta repeat 142 176 IPR001680 GO:0005515
Lan19g0418 949 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 623 655 - -
Lan19g0418 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 102 135 IPR001680 GO:0005515
Lan19g0418 949 Gene3D - 245 447 IPR015943 GO:0005515
Lan19g0418 949 Coils Coil 285 305 - -
Lan19g0418 949 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 486 518 - -
Lan19g0418 949 SUPERFAMILY Nucleoporin domain 350 702 - -
Lan19g0418 949 ProSitePatterns Trp-Asp (WD) repeats signature. 163 177 IPR019775 -
Lan19g0418 949 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 186 220 - -
Lan19g0418 949 SMART WD40_4 574 613 IPR001680 GO:0005515
Lan19g0418 949 SMART WD40_4 439 476 IPR001680 GO:0005515
Lan19g0418 949 SMART WD40_4 533 571 IPR001680 GO:0005515
Lan19g0418 949 SMART WD40_4 48 92 IPR001680 GO:0005515
Lan19g0418 949 SMART WD40_4 95 134 IPR001680 GO:0005515
Lan19g0418 949 SMART WD40_4 137 176 IPR001680 GO:0005515
Lan19g0418 949 SMART WD40_4 240 283 IPR001680 GO:0005515
Lan19g0418 949 SMART WD40_4 616 655 IPR001680 GO:0005515
Lan19g0418 949 SMART WD40_4 179 218 IPR001680 GO:0005515
Lan19g0418 949 SMART WD40_4 398 436 IPR001680 GO:0005515
Lan19g0418 949 SMART WD40_4 658 697 IPR001680 GO:0005515
Lan19g0418 949 SMART WD40_4 479 518 IPR001680 GO:0005515
Lan19g0418 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 486 518 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0418 Lan-Chr19 5491073 5511367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0418 564 706 Miscellaneous Gene Families AT5G08390 27.273 4.24e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0418 K14556 - gmx:100775810 1630.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0405 9 5880509 5889852 Lan19g0418 19 5491073 5511367 LSH