Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1921 ATGGCTACTGCTGCAGTTATTGGACTTAGTGGAGGAAAGAGGCTCTTGAGTTCATCTTACCATTATTCAGATATTACAGAAAAGCTTTTCTATGGAAGTGATTTTGGATTCACACACTATCAGATTGCACCTACAAAATATGTTATAATTTCCAAGAAGTCATCAAATTATACTCCAACTTTTCCATCATGCAATAAGGAAAAGGAGATTCAGTCCATCAAGGCTCTTAAGGAACATGTTGATGCTGCCCCCACTATTGCAGATCAATGGTTTGAGGGATATGATAATTGTGATGTCTTAGAGGTGGAAGGTTCTGACATGGATAATTCTATGGATGCACTTCTTTTGCTGCAGAAATCAATGCTTGAAAAGCAATGGAACCTTTCATTTCAAAGGGGAGTGTTACGTAAGAAGTCGAAAAGAGAAAAAAGCCGTAGGAAAGATACGGTGACTTGCTCTGGTGTATCTGCTAGGCAAAGAAGAATGAGCACTAAGAGGAAGACTCCTGGTATGCAGTTGAGGTCCATAATCAGTCCAGAACTGCTTCAAAACCGGTTGAAGGGCTATGTGAAAGGAGTACTGAGTGAGGAATTGCTCTCTCATGCAGAAGTTGTGAACCTATCCCAAAAAATAAAAGTTGGGCTTTCCTTAGATGAACACAAATGCAGACTGAAGGAAAGACTAGGATGTGAACCCTCGGATGATCAAATTGCAACTTCACTGAAGATTTCTTGTGCTGAACTACGAGCAAGAATGATAGAGTGCTCTTTGGCTAGAGAAAGGTTGACTATGAGCAATGTTCGCTTAGTCATGTCTATTGCTCAAAGATATGATAACCTGGGTGCTGAAATGGCTGACCTTGTTCAGGGTGGTTTGATTGGACTACTTCGTGGGATTGAGAAATTTGATTCTTCTAAAGGGTTCAAGATTTCAACTTATGTTTATTGGTGGATACGTCAGGGTGTTTCAAGAGCTTTAGTTGAGAATTCAAGAACATTAAGATTGCCTACTCATTTGCATGAGAGGTTATCTTTGATCCGCAATGCAAAGTTAAGACTAGAAGAGAAAGGCATTACTCCAACTATTGAGAGGATTGCGAAAAGCCTTAATATGTCTCAAAAGAAAGTTAAAAATGCTACCGAGGCAATCAATAAAGTTATCTCACTTGATAGGGAAGCATTCCCCTCTCTGAATGGTCTTCCGGGAGAAACTCATCATAGTTACATTGCAGATAGCCGCCATGAGAATATCCCGTGGAATGGAGTAGATGAGTGGGCACTAAAGGATGAAGTGAACAAACTCATTAATGTGACCCTTGTGGAACGAGAACGGGAAATCATTCGATTTTATTACGGATTGGATAAAGAATGTCTTACATGGGAGGACATAAGTAAACGGATTGGGTTGTCAAGAGAAAGAGTAAGACAAGTTGGACTTGTTGCATTGGAGAAACTAAAACATGCTGCCAGGAAGAGAGAAATGGAAGCTATGCTATTGAATTGA 1503 0.3999 MATAAVIGLSGGKRLLSSSYHYSDITEKLFYGSDFGFTHYQIAPTKYVIISKKSSNYTPTFPSCNKEKEIQSIKALKEHVDAAPTIADQWFEGYDNCDVLEVEGSDMDNSMDALLLLQKSMLEKQWNLSFQRGVLRKKSKREKSRRKDTVTCSGVSARQRRMSTKRKTPGMQLRSIISPELLQNRLKGYVKGVLSEELLSHAEVVNLSQKIKVGLSLDEHKCRLKERLGCEPSDDQIATSLKISCAELRARMIECSLARERLTMSNVRLVMSIAQRYDNLGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRNAKLRLEEKGITPTIERIAKSLNMSQKKVKNATEAINKVISLDREAFPSLNGLPGETHHSYIADSRHENIPWNGVDEWALKDEVNKLINVTLVEREREIIRFYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEAMLLN* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1921 500 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 185 332 IPR013325 GO:0003700|GO:0006352|GO:0006355
Lan8g1921 500 Gene3D RNA Polymerase Primary Sigma Factor 66 332 - -
Lan8g1921 500 Pfam Sigma-70, region 4 438 487 IPR007630 GO:0003700|GO:0006352|GO:0006355
Lan8g1921 500 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 414 491 IPR013324 -
Lan8g1921 500 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 334 390 IPR013324 -
Lan8g1921 500 Pfam Sigma-70 region 3 341 412 IPR007624 GO:0003700|GO:0006352|GO:0006355
Lan8g1921 500 ProSitePatterns Sigma-70 factors family signature 1. 286 299 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lan8g1921 500 Gene3D - 417 495 IPR036388 -
Lan8g1921 500 Gene3D - 333 384 IPR036388 -
Lan8g1921 500 Pfam Sigma-70 region 2 265 331 IPR007627 GO:0003700|GO:0006352|GO:0006355
Lan8g1921 500 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 1 499 - -
Lan8g1921 500 PRINTS Major sigma-70 factor signature 286 299 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lan8g1921 500 PRINTS Major sigma-70 factor signature 310 318 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lan8g1921 500 PRINTS Major sigma-70 factor signature 439 451 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lan8g1921 500 PRINTS Major sigma-70 factor signature 459 474 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lan8g1921 500 PRINTS Major sigma-70 factor signature 474 485 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lan8g1921 500 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 258 488 IPR014284 GO:0003700|GO:0006352|GO:0006355
Lan8g1921 500 PANTHER RNA POLYMERASE SIGMA FACTOR SIGA 1 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1921 Lan-Chr8 25286071 25290737 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1921 K03086 - gmx:100801884 811.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1921 8 25286071 25290737 Lan13g0071 13 392968 397653 LSH