Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0071 ATGATTAATTATACAAAGTGGATAGGAAGGGATATTACAATGGCTATTGCTGCTGTGATTGGACTTAATGGAGGAAAGAGGCTCTTGAGTTCATCTTACCATTACTCTGATATTACAGAAAAACTTTTCTATGGAAGTGATTTTGGATCAGCACACTATCAGGTTGCTCAAACAAAACCTGTTATAATTGCTAAGAAGACATCAAATTACACGCCGAGTTTTCCAACATGCAACAATGAGAAGCAGATTCAGTCCATCAAGGCTCTTAAGGAGCATGTTGTTGATGCCCCAACTATTGCAGATCAATGGTTTGAGGGATATAATAATTCTAATGAGTTAGAGGTGGAATGTTCTGACATAGGTTATTCTGTGGATGCACTTCTTTTGCTGCAGAAGTCAATGCTGGAAAAGCAATGGGACCTTTCGTTTGAGAAGGGAGTGTTAAGTGAGAAATCGAGAAGAGAAAAAAGCCGTAGGAAAGTAAAGGTGACTAGTTCTGGTGTGTCTGCAAGGCAAAGAAGAATGAGTACTAAGAGGAAGACTCCCGGTAAAACCGGCTCAGCAATGATACAACCTTGTATGCAGTTGAGGTCCATAATCAGTCCTGAGCTGCTTCAAAACCGGTTGAAGGGTTATGTGAAAGGAGTAGTAAGTGAGGAATTGCTCTCTCATGCAGAAGTTGTGAACCTATCAGAGAAAATTAAAGTTGGGCTTTCCTTAGATGAGCACAAATGCAGACTGAAGGAAAGGCTAGGATGTGAACCCTCAGATGACCAACTTGCAACTTCCCTGAAGATTTCTCGTTCTGAACTACGAGCAAAAATGATAGAGTGCTCTTTGGCTAGAGAAAGGTTGACTATGAGCAATGTTCGCTTAGTCATGTCTATTGCTCAAAGATATGTTAACCTGGGTGCTGAAATGGCTGACCTTGTTCAGGGTGGCTTGATTGGACTACTTCGTGGGATCGAGAAGTTTGATTCGTCTAAAGGGTTCAAGATTTCAACTTATGTTTATTGGTGGATACGTCAGGGTGTTTCAAGAGCTTTAGTTGAGAATTCAAGAACATTAAGATTGCCTACTCATTTGCATGAGAGGATATCTTTGATCCGCAACGCAAAGTTTAGACTAGAAGAGAAAGGCATTACTCCAACCATTGATAGGATTGCGAAAAGCCTTAATATGTCTCAAAAGAAAGTTAAAAATGCTACTCAGGCAATCAATAAAGTTATCTCACTTGACAGGGAACCATTCCCCTCTTTGAATGGTCTTCCCGGAGAAACTCATCATAGTTATATTGCAGATAGCCACGTTGAGAATATCCCGTGGAATGGAGTAGATGAATGGGCGCTAAAGGATGAAGTGAACAAACTCATTAATGTGACCCTTGTGGAACGAGAAAGAGAAATTATCCGTCTTTATTATGGATTGGAAAAAGAATGTCTTACGTGGGAGGACATTAGTAAACGGATAGGGTTGTCAAGAGAAAGAGTAAGACAAGTTGGACTTGTTGCATTGGAGAAACTAAAACATGCTGCAAGGAAGAAAGACATGGAGGCCATGCTATTGAATTGA 1572 0.4039 MINYTKWIGRDITMAIAAVIGLNGGKRLLSSSYHYSDITEKLFYGSDFGSAHYQVAQTKPVIIAKKTSNYTPSFPTCNNEKQIQSIKALKEHVVDAPTIADQWFEGYNNSNELEVECSDIGYSVDALLLLQKSMLEKQWDLSFEKGVLSEKSRREKSRRKVKVTSSGVSARQRRMSTKRKTPGKTGSAMIQPCMQLRSIISPELLQNRLKGYVKGVVSEELLSHAEVVNLSEKIKVGLSLDEHKCRLKERLGCEPSDDQLATSLKISRSELRAKMIECSLARERLTMSNVRLVMSIAQRYVNLGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERISLIRNAKFRLEEKGITPTIDRIAKSLNMSQKKVKNATQAINKVISLDREPFPSLNGLPGETHHSYIADSHVENIPWNGVDEWALKDEVNKLINVTLVEREREIIRLYYGLEKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKDMEAMLLN* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0071 523 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 357 413 IPR013324 -
Lan13g0071 523 ProSitePatterns Sigma-70 factors family signature 1. 309 322 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lan13g0071 523 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 430 514 IPR013324 -
Lan13g0071 523 Gene3D - 440 518 IPR036388 -
Lan13g0071 523 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 14 522 - -
Lan13g0071 523 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 281 511 IPR014284 GO:0003700|GO:0006352|GO:0006355
Lan13g0071 523 Gene3D RNA Polymerase Primary Sigma Factor 78 355 - -
Lan13g0071 523 PRINTS Major sigma-70 factor signature 309 322 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lan13g0071 523 PRINTS Major sigma-70 factor signature 333 341 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lan13g0071 523 PRINTS Major sigma-70 factor signature 462 474 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lan13g0071 523 PRINTS Major sigma-70 factor signature 482 497 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lan13g0071 523 PRINTS Major sigma-70 factor signature 497 508 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lan13g0071 523 Pfam Sigma-70 region 2 288 354 IPR007627 GO:0003700|GO:0006352|GO:0006355
Lan13g0071 523 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 208 355 IPR013325 GO:0003700|GO:0006352|GO:0006355
Lan13g0071 523 MobiDBLite consensus disorder prediction 154 187 - -
Lan13g0071 523 Pfam Sigma-70 region 3 364 436 IPR007624 GO:0003700|GO:0006352|GO:0006355
Lan13g0071 523 PANTHER RNA POLYMERASE SIGMA FACTOR SIGA 14 522 - -
Lan13g0071 523 CDD Sigma70_r4 451 509 - -
Lan13g0071 523 Pfam Sigma-70, region 4 461 510 IPR007630 GO:0003700|GO:0006352|GO:0006355
Lan13g0071 523 Gene3D - 356 407 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0071 Lan-Chr13 392968 397653 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0071 K03086 - gmx:100801884 818.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan13g0071 13 392968 397653 Lan13g0071 13 392968 397653 ECH
Lan8g1921 8 25286071 25290737 Lan13g0071 13 392968 397653 LSH