Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1873 ATGGAGAGTAGTATCATTCCTCATGGTAGCTTGAAGAATGGAGAGGTTCTAGATGGTTCTAATATAATGGAGTTAGTTGGGAATGAAAAAGTATTCAGTAACTTTGTGGAACATAAGTTTGAAGAATTGGATAAAGATAAAGATGGTAAACTTTCTGTGAATGAACTTCAACCTGCTGTTGCTGATATTGGTGCTGCTCTTGGTTTACCTGCTCATGGTTCTAATCCTGATTCTGATCACATCTATTCTGAGGTGTTGAATGAATTCACACATGGGAAGCATGAAAAAGTGAGTAAGAGTGAGTTCAAAGAGGTTTTATCAGACATTCTTTTGGGCATGGCTGCAGGACTAAAAAGAGATCCAATTGTGATACTTCGCATTGATGGTGAAGATCTTGTTGAATTTGTTAATGGTCCAAGTTATGAAGCAGAAATAGCATCCATATTCTACCACATTGCATCACCCCATAAATCACTTCATCACCTTGTTATTGAGGCTCTAGCCAAACTCACTGTTGAGCAAGGGATTCCTCCTACTTCAGATTCTTGGGTTATTAACAATATTGTGGAACCAGCAATGCTATCTGTAGTTGGCACTAATTGGGATAAGCCTCTTTCTGACCAAGATGGATTCTTTGAGGAATTTAAGAAAGTGGCTTTGAGTATTGCTGATAGACTTAAGGATCAACCTGTGATTGTTGCTCATAGTGAAAACACTTTTGATGGAAGTGGTGTTAAGAGATTATTATTCAACAAGTTTGAATTAGACAAGACTTTTAACTCAGCTTTAGAGAATTTGCCTAAAGATCGAAACGGAAAATTTTCGAAGGAGTATTTACGGGTGGCGTTGGACATGCTATCTCCTTCTGCTGGTTTACCTCCGGTTGGTGCAGTTGAACAGATGGATAAGGTTATTGGTGAAGTCTTTAAGATGATAAATGCAGATGATGGAAAAGTGGTCAAAGAAGATGAATTCAAGAAAATATTAACTGAAATATTGGGGAGTATAATGTTACAATTAGAGGGTAATCCCATATCAGTTTCTTCAGATTCAGTAGTGCATGAGCCTCTTGGCTCAGCTTCTACACTTCTGCAACCATCTTCTACCGAAACAGCATAG 1119 0.3807 MESSIIPHGSLKNGEVLDGSNIMELVGNEKVFSNFVEHKFEELDKDKDGKLSVNELQPAVADIGAALGLPAHGSNPDSDHIYSEVLNEFTHGKHEKVSKSEFKEVLSDILLGMAAGLKRDPIVILRIDGEDLVEFVNGPSYEAEIASIFYHIASPHKSLHHLVIEALAKLTVEQGIPPTSDSWVINNIVEPAMLSVVGTNWDKPLSDQDGFFEEFKKVALSIADRLKDQPVIVAHSENTFDGSGVKRLLFNKFELDKTFNSALENLPKDRNGKFSKEYLRVALDMLSPSAGLPPVGAVEQMDKVIGEVFKMINADDGKVVKEDEFKKILTEILGSIMLQLEGNPISVSSDSVVHEPLGSASTLLQPSSTETA* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1873 372 ProSitePatterns EF-hand calcium-binding domain. 44 56 IPR018247 -
Lan8g1873 372 ProSiteProfiles EF-hand calcium-binding domain profile. 31 66 IPR002048 GO:0005509
Lan8g1873 372 SMART efh_1 258 286 IPR002048 GO:0005509
Lan8g1873 372 SMART efh_1 304 332 IPR002048 GO:0005509
Lan8g1873 372 SMART efh_1 35 63 IPR002048 GO:0005509
Lan8g1873 372 Pfam EF-hand domain pair 38 105 IPR002048 GO:0005509
Lan8g1873 372 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 12 371 - -
Lan8g1873 372 SUPERFAMILY EF-hand 36 343 IPR011992 -
Lan8g1873 372 Gene3D - 14 117 - -
Lan8g1873 372 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 12 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1873 Lan-Chr8 24986252 25005076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1873 12 371 EF-hand Containing Proteins AT4G38810 66.298 9.26e-171 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1873 - - gmx:100820516 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0066 7 338572 341102 Lan8g1873 8 24986252 25005076 LSH
Lan8g1873 8 24986252 25005076 Lan13g0125 13 738578 740293 LSH