Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1862 ATGAGAGGAATCCTTTCGAGTTCAAAGCTAATTGCAAAGAAACTCCTCTTCAATGGAGCAACAACAAACCAATTCTCACAATTCAATAATCTTCATCATAATCGTTCATATAGCCTGATTCCAATGGTGATAGAGCATTCTTCTAGAGGAGAAAGAGCATATGATATATTCTCTCGTCTTCTTAAGGAACGTATTGTCTGCATCAATGGTCCTATAACTGATGATACTGCACATGTTGTTGTTGCTCAGCTTCTCTTTCTTGAATCTGAAAATCCTTCCAAACCTATACACGTTTATCTCAATTCCCCTGGTGGCGCTGTTACTGCTGGTCTTGCAATTTATGACACAATGCAGTACATTCGCTCTCCTATTAATACAACCTGTTTGGGTCAAGCTGCATCCATGGCTTCTCTCCTTTTGGCTGCGGGTGCCAAGGGTCAGAGGCGTGCTCTACCAAATGCAACAATCATGATTCATCAGCCTTCCGGTGGCTATAGTGGTCAGGCAAAGGATATTGCAATTCATACGAAGGAAATTGTTCGGATTTGGGATTCATTGAATGAACTATACAAGAAACACACAGGCCAACCAATTGACATTATTCAAAAGAATATGGACAGGGATTATTTTATGACACCAGAAGAGGCAAAGGAGTTCGGGATTATTGATGAGGTTATCGATCAGAGACCAGCGGCTTTAGTTTCTGACGCTGTTGCTGATGAAGGAAAAGATAAAGGTTCAACTTAG 747 0.4096 MRGILSSSKLIAKKLLFNGATTNQFSQFNNLHHNRSYSLIPMVIEHSSRGERAYDIFSRLLKERIVCINGPITDDTAHVVVAQLLFLESENPSKPIHVYLNSPGGAVTAGLAIYDTMQYIRSPINTTCLGQAASMASLLLAAGAKGQRRALPNATIMIHQPSGGYSGQAKDIAIHTKEIVRIWDSLNELYKKHTGQPIDIIQKNMDRDYFMTPEEAKEFGIIDEVIDQRPAALVSDAVADEGKDKGST* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1862 248 ProSitePatterns Endopeptidase Clp serine active site. 126 137 IPR018215 -
Lan8g1862 248 CDD S14_ClpP_2 55 225 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lan8g1862 248 Pfam Clp protease 49 228 IPR023562 -
Lan8g1862 248 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 32 247 IPR023562 -
Lan8g1862 248 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 32 247 - -
Lan8g1862 248 Gene3D - 26 233 - -
Lan8g1862 248 PRINTS Clp protease catalytic subunit P signature 55 70 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lan8g1862 248 PRINTS Clp protease catalytic subunit P signature 95 115 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lan8g1862 248 PRINTS Clp protease catalytic subunit P signature 126 143 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lan8g1862 248 PRINTS Clp protease catalytic subunit P signature 147 166 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lan8g1862 248 PRINTS Clp protease catalytic subunit P signature 204 223 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lan8g1862 248 SUPERFAMILY ClpP/crotonase 47 231 IPR029045 -
Lan8g1862 248 ProSitePatterns Endopeptidase Clp histidine active site. 148 161 IPR033135 -
Lan8g1862 248 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 39 229 IPR001907 GO:0004176|GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1862 Lan-Chr8 24934893 24937014 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1862 K01358 - oeu:111399164 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1862 8 24934893 24937014 Lan13g0140 13 818073 820147 LSH