Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0140 ATGAGAGGCATCCTTCAGAGTTCAAAGCTGATTGCAACAAATCTTCTCTTCAATCATCATCATCGTCGTGCATATAGCGTTATTCCAATGGTTATAGAACACTCTTCCAGAGGAGAAAGAGCTTATGATATCTTCTCTCGTCTTCTCAAAGAGCGAATCGTTTGCATCAATGGTCCAATCTCTGATGATACTGCACATGTTGTTGTTGCTCAGCTTCTCTTTCTCGAATCTGAAAACCCTTCCAAACCTATTCATATGTACCTCAATTCCCCTGGTGGCGCCGTCACCGCTGGCCTTGCAATTTATGACACTATGCAGTACATTCGCTCTCCTATTAATACAATATGTTTGGGTCAAGCTGCATCCATGGCTTCTCTCCTATTGGCTGCAGGAGCCAAGGGTCAAAGGCGTGCTCTTCCAAATGCAACAATCATGATTCATCAGCCTTCAGGTGGTTATAGTGGCCAGGCAAAGGATATTGCAATTCATACGAAGCAGATTGTTCGGATTTGGGATTCATTGAATGAATTGTACAAGAAGCATACAGGCCAACCAATTGACATTATTCAAAAGAATATGGATAGGGATTATTTTATGACTCCGGAAGAGGCAAAGGAGTTTGGGATTATTGATGAGGTTATTGATCAGAGACCAGCAGCTTTGGTTTCTGATGCTGTTTCTAACGAAGGAAAAGATAAAGATTCAACTTAG 711 0.4177 MRGILQSSKLIATNLLFNHHHRRAYSVIPMVIEHSSRGERAYDIFSRLLKERIVCINGPISDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGAVTAGLAIYDTMQYIRSPINTICLGQAASMASLLLAAGAKGQRRALPNATIMIHQPSGGYSGQAKDIAIHTKQIVRIWDSLNELYKKHTGQPIDIIQKNMDRDYFMTPEEAKEFGIIDEVIDQRPAALVSDAVSNEGKDKDST* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0140 236 Gene3D - 16 221 - -
Lan13g0140 236 CDD S14_ClpP_2 43 213 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lan13g0140 236 ProSitePatterns Endopeptidase Clp serine active site. 114 125 IPR018215 -
Lan13g0140 236 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 20 234 IPR023562 -
Lan13g0140 236 PRINTS Clp protease catalytic subunit P signature 43 58 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lan13g0140 236 PRINTS Clp protease catalytic subunit P signature 83 103 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lan13g0140 236 PRINTS Clp protease catalytic subunit P signature 114 131 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lan13g0140 236 PRINTS Clp protease catalytic subunit P signature 135 154 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lan13g0140 236 PRINTS Clp protease catalytic subunit P signature 192 211 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lan13g0140 236 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 20 234 - -
Lan13g0140 236 SUPERFAMILY ClpP/crotonase 35 219 IPR029045 -
Lan13g0140 236 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 27 217 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lan13g0140 236 Pfam Clp protease 37 216 IPR023562 -
Lan13g0140 236 ProSitePatterns Endopeptidase Clp histidine active site. 136 149 IPR033135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0140 Lan-Chr13 818073 820147 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0140 K01358 - rcu:8271879 390.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1862 8 24934893 24937014 Lan13g0140 13 818073 820147 LSH