Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1828 ATGATTTCCCTTCTTACAATGTTACCTCTCAAAGTGTTTGTCATTTTTATCATTGTTTCATTGGCCATTGCTAGCACTAAGGATATTGTTGAAGATAATAGTGATGGTAATGTTAATAACATTAGCAATACAAAAAAGACTGTGACTTATGATGGAAGATCACTCATTATCAATGGAAAACGAGAGCTTCTCTTCTCTGGTTCAATCCATTACACACGAAGCACCCCTGAGATGTGGCCAGAGCTTATTAACAAGGCCAGAAAAGGAGGTTTAAATGTGATCCAAACTTATGTGTTTTGGAATGCACATGAGACTGAGAAAGGCAAGTTCAACTTTGAAGGCCAATATGATTTGGTAAAGTTCATTAAGCTTGTTCATGAGAAAGGGATGTATGTAACCCTCAGAGTTGGCCCTTTCATCCAAGCTGAATGGAATCATGGAGGACTTCCATATTGGCTAAGAGATGTCCCAGAAATCATATTCCGCTCTAACAACGGACCCTTTAAGAAACACATGAAGGACTATGTATCAGCCATAATAGGAAGGGTGAGAGAGGCGAATCTCTTTGCTCCGCAAGGAGGCCCTATCATCTTGGCACAGATTGAGAATGAGTACAACCATATCCAACTAGCTTATGATGCAGAAGGAGATAATTATGTCCAATGGGCCGCAAAATTGGCCGTGTCGATGGAGATTGGAGTTCCATGGATTATGTGCAAGCAGACCGATGCTCCTGATCCAGTGATCAATGCATGCAATGGAAGGCACTGTGGTGATACCTTCACAGGTCCAAACAAACCATACAAGCCTTCCATATGGACTGAAAACTGGACAGCTCAGTACAGAGTATTTGGTGATCCACCATCCCAAAGATCAGCTGAAGACATCGCTTTCTCAATTGCTCGCTTCTTTTCGAAGAATGGATGTTTGGCTAACTACTATATGTACCATGGTGGAACAAATTTTGGTAGAACAAGTTCGGCCTTTTCCACAACCCGTTATTATGATGAAGCTCCTCTTGATGAGTTTGGCCTTCAAAGAGAACCAAAATGGAGCCACTTGAGGGATGTGCACAAAGCTCTCAACCTATGTAAGAAGGCTTTGCTCTCAAGTCAATCCAGTGTCACAAAATTGAGCCTATTTCATGAGATTATAGTGTATGAGAAGCCAGGAACTGATGTATGTTCTGCTTTCATCACTAACAACCACACAAAAGCACCAGCAACTTTAAAATTCAGAGGTTTCGACTATTATTTGCCGCCACGTTCTATTAGCATCCTTCCTGATTGCAAGACTGTGGTCTTCAACAGTCAAAATATTGTTTCACAACATAATTCAAGGAATTACAAGAAGTCGAAGGCCGCACACGATAATCTTAAGTGGGAAATGTTTTCGGAGTCCATTCCAACTTTTAAACAATTACCAGTCAAAGAAAAAAACCCTGTAGAACTTTATTCCATGCTTAAAGACAAAACTGATTATGCATGGTACACCACCAGTGTTGAATTGGGTCCAGAAGACTTTCCAAAGAAGAATGAGATATCGCCCGTTCTTCGTATTATGAGTCTTGGCCATTCGATGCTTGTCTTTGTAAATGGAGAATACATAGGATCTGGTCATGGTAGCCATGAGGAGAAAACTTTTGAATTCCAGAAAACTGTAAAGTTCAAAGTTGGAGTTAACCATATATCTATCTTGGCTGCCACAGTGGGACTTCCGGATAGTGGAGCATACATGGAACACAGGTATGCTGGACCAAAATCTATAACAATCCTTGGTTTGAACTCTGGAACAGTTGATCTGACTCATAATGGTTGGGGTAATCAGGTTGGTCTTCATGGTGAGAAGAATAGGATTTTTTCTAAGGAGGGATCAAATAATGTACAATGGAAGGATGCTAGAGGAAAAGGACAAGCTCTTTCTTGGTACAAGACAACATTTGGAACACCAGAGGGAAGGGATCCTGTTGCAATCAAGATGGATGGTATGGGGAAAGGAATGATTTGGGTCAATGGTTTAAGCATTGGTCGACATTGGATGAGTTATCTCTCTCCTCTTGGACAACCTACTCAATCAGACTACCACATCCCAAGAGCATTCCTGAAAGAAAAAGAGAACTTGCTTGTTATATTGGAGGAAGAGGAAGGAAGTCCAGAAAACATTACAATCCTAAGAGTGAATAGAGACACAATATGCAGTTTCATTACAGAGAATCACCAACCCAATGTGAAGTCATGGGCAAATAAGGGAATGAAACTCACACCTGTTGTGGATAAACTGAGACCAGAAGCTTTCCTTAAGTGTCCAAACCACAAAACCATTATGGCTGTAGAATTTGCAAGCTATGGTGATCCTATAGGTTTCTGTGGAAGCTTTAGTTTGGGAAAATGTAATGCTCCTAATACAAAGCAGATTGTGGAGCAGCATTGTTTGGGAAAAGAATCATGTTCAGTTCCATTGGATAAACCAATCTTCATAAGGAATAATGAAGATGGTTGCCCAGGTGTGAAGACACTTGCTATCCAAGTTTTATGTGGCACTGGTAATTCCAAAGAATAA 2559 0.406 MISLLTMLPLKVFVIFIIVSLAIASTKDIVEDNSDGNVNNISNTKKTVTYDGRSLIINGKRELLFSGSIHYTRSTPEMWPELINKARKGGLNVIQTYVFWNAHETEKGKFNFEGQYDLVKFIKLVHEKGMYVTLRVGPFIQAEWNHGGLPYWLRDVPEIIFRSNNGPFKKHMKDYVSAIIGRVREANLFAPQGGPIILAQIENEYNHIQLAYDAEGDNYVQWAAKLAVSMEIGVPWIMCKQTDAPDPVINACNGRHCGDTFTGPNKPYKPSIWTENWTAQYRVFGDPPSQRSAEDIAFSIARFFSKNGCLANYYMYHGGTNFGRTSSAFSTTRYYDEAPLDEFGLQREPKWSHLRDVHKALNLCKKALLSSQSSVTKLSLFHEIIVYEKPGTDVCSAFITNNHTKAPATLKFRGFDYYLPPRSISILPDCKTVVFNSQNIVSQHNSRNYKKSKAAHDNLKWEMFSESIPTFKQLPVKEKNPVELYSMLKDKTDYAWYTTSVELGPEDFPKKNEISPVLRIMSLGHSMLVFVNGEYIGSGHGSHEEKTFEFQKTVKFKVGVNHISILAATVGLPDSGAYMEHRYAGPKSITILGLNSGTVDLTHNGWGNQVGLHGEKNRIFSKEGSNNVQWKDARGKGQALSWYKTTFGTPEGRDPVAIKMDGMGKGMIWVNGLSIGRHWMSYLSPLGQPTQSDYHIPRAFLKEKENLLVILEEEEGSPENITILRVNRDTICSFITENHQPNVKSWANKGMKLTPVVDKLRPEAFLKCPNHKTIMAVEFASYGDPIGFCGSFSLGKCNAPNTKQIVEQHCLGKESCSVPLDKPIFIRNNEDGCPGVKTLAIQVLCGTGNSKE* 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1828 852 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 193 205 IPR019801 GO:0004553|GO:0005975
Lan8g1828 852 Gene3D Glycosidases 44 364 - -
Lan8g1828 852 Gene3D - 611 735 - -
Lan8g1828 852 ProSiteProfiles SUEL-type lectin domain profile. 758 846 IPR000922 GO:0030246
Lan8g1828 852 Gene3D - 432 585 - -
Lan8g1828 852 Pfam Beta-sandwich domain in beta galactosidase 368 440 IPR041392 -
Lan8g1828 852 Pfam Glycosyl hydrolases family 35 54 360 IPR031330 -
Lan8g1828 852 Pfam Beta-galactosidase jelly roll domain 628 712 IPR025300 -
Lan8g1828 852 SUPERFAMILY Galactose-binding domain-like 424 586 IPR008979 -
Lan8g1828 852 PANTHER BETA-GALACTOSIDASE RELATED 27 839 IPR001944 GO:0004553|GO:0005975
Lan8g1828 852 Pfam Galactose binding lectin domain 766 845 IPR000922 GO:0030246
Lan8g1828 852 PANTHER GLYCOSIDE HYDROLASE FAMILY 35 PROTEIN 27 839 - -
Lan8g1828 852 SUPERFAMILY (Trans)glycosidases 46 364 IPR017853 -
Lan8g1828 852 SUPERFAMILY Galactose-binding domain-like 603 749 IPR008979 -
Lan8g1828 852 Gene3D - 761 851 IPR043159 -
Lan8g1828 852 PRINTS Glycosyl hydrolase family 35 signature 58 75 IPR001944 GO:0004553|GO:0005975
Lan8g1828 852 PRINTS Glycosyl hydrolase family 35 signature 79 97 IPR001944 GO:0004553|GO:0005975
Lan8g1828 852 PRINTS Glycosyl hydrolase family 35 signature 134 153 IPR001944 GO:0004553|GO:0005975
Lan8g1828 852 PRINTS Glycosyl hydrolase family 35 signature 191 206 IPR001944 GO:0004553|GO:0005975
Lan8g1828 852 PRINTS Glycosyl hydrolase family 35 signature 272 287 IPR001944 GO:0004553|GO:0005975
Lan8g1828 852 PRINTS Glycosyl hydrolase family 35 signature 309 324 IPR001944 GO:0004553|GO:0005975
Lan8g1828 852 PRINTS Glycosyl hydrolase family 35 signature 328 344 IPR001944 GO:0004553|GO:0005975
Lan8g1828 852 PRINTS Glycosyl hydrolase family 35 signature 638 652 IPR001944 GO:0004553|GO:0005975
Lan8g1828 852 PRINTS Glycosyl hydrolase family 35 signature 665 681 IPR001944 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1828 Lan-Chr8 24704968 24711188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1828 48 846 Glycoside Hydrolase AT2G16730 60.973 0.0 1054
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1828 - - gmx:100780092 1318.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1828 8 24704968 24711188 Lan13g0180 13 1109736 1130777 LSH