Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1801 ATGTGTGACACTATGTCAGGACATGCCACAAATATTCGACCTGTTAAAGGTCCAGAAATTATTGAATATATAGAGGATGAAAAGAAAACAAACCGTGGGCCTTTAAAGAAGGTAGCAGTAAGTGCATCTTCTATGTTCAAGAGATCCTTCACAAAGAAGGGTCGACGGCATAGCAGGGTTATGTCTATTACTGCTATTGAAGATGACCTTGACGCAGAAGAGTTGCAAGCTGTTGATTCTTTTCGCCAAGCTCTCATCTTAGATGAGCTCTTACCATCAAAACATGATGATCATCATATGATGCTAAGATTCTTGAGAGCAAGGAAGTTTGACATTGAGAAATCAAAACAAATGTGGGCAGATATGCTTCAGTGGAGGAGGGAGTTTGGTGCTGACACCATCATGGAGGATTTTGAATTCAAAGAGATTGATGAAGTTCTAAAATACTATCCACAAGGGCATCATGGAGTTGATAAAGATGGATTACCTGTTTACATTGAAAAATTGGGTCAGGTTGATCCTCACAAGCTTATGCAAGTAACAACTATGGACCGTTATCTTAAGTATCATGTAAGAGAGTTTGAGAGAACCTTCAATGTTAAGTTACCTGCATGTTCAATCGCAGCAAAGAAGCACATTGATCAAAGCACAACTATCTTGGATGTGCAAGGAGTGGGTCTTAAAAGTATGAACAAAGCCGCAAGGGATCTTCTTCAGAGACTTCAGAAAATTGACGGTGACAACTATCCTGAGTCTTTGAACCGTATGTTTATCATCAATGCTGGTTCTGGATTTAGGCTGTTGTGGAACACTGTTAAGTCATTTCTTGATCCCAAGACCACCGCGAAAATCCATGTTCTAGGTAACAAATACCAAAGCAAGTTGCTTGAAATCATTGATGCCAGTGAACTTCCAGAGTTCTTGGGTGGTACTTGTACTTGTGCAGATAAAGGTGGTTGTATGCTTTCTGACAAGGGACCATGGAATAATCCAGATATCTTAATGATGGTTCAAAATGGTGAGGGAAAATGCAGGAGGAAAAACTTATCATCCATTGAGACAATCATTGAATATGAAACAACATATCATAAGGAGCACAAGGAAGCACGCCATGTGGAGCATCCTGAACCATGTTCTATTCCAGAAGTCAAAAAACAGTGTAATGCATATCAGTTCGTCCCAGTGAATGACAAGACAGTCAATACTGCTTTGTGTAAAGCAGTACAAAATCATCAACTTGAACCTTCTAAAGCTGCAGATTATTTCCCTGAGAGTCCATGCAAAGCTTCTGATGGGTTTAGCAACCCATTTGTTGGTTTAATCATGGCCATTATAACTGGGATTATAACCATGATGCGCTTGACAAAGGACATGCCTAAGAAAACCACAGGAGTAGTAAATTATGATGAGACTATGATGAAAGCAGCACCTACCATTTCCATTGATAATCACATGGATATGATAAAACGCATGGTTGAACTAGAAGAGAAGGTCAATGTCCTCAGCATGAGACCAGAAATGCCACCAGAAATGGAGGAACTACTGAATAATGCTCTCAGTAGAGTCACCACTCTCGAACAAGAGTTGGCTTCAGCCATAGAGGCACGTGATGATGCCCTTGCTAAGCAAGTAGAACTCCAAGCACACATTGAAAACAAGAAGAAGAATAAGAAAAAGAAGAAGCTGTTCAGCTTCCATTGGTAA 1704 0.4008 MCDTMSGHATNIRPVKGPEIIEYIEDEKKTNRGPLKKVAVSASSMFKRSFTKKGRRHSRVMSITAIEDDLDAEELQAVDSFRQALILDELLPSKHDDHHMMLRFLRARKFDIEKSKQMWADMLQWRREFGADTIMEDFEFKEIDEVLKYYPQGHHGVDKDGLPVYIEKLGQVDPHKLMQVTTMDRYLKYHVREFERTFNVKLPACSIAAKKHIDQSTTILDVQGVGLKSMNKAARDLLQRLQKIDGDNYPESLNRMFIINAGSGFRLLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEIIDASELPEFLGGTCTCADKGGCMLSDKGPWNNPDILMMVQNGEGKCRRKNLSSIETIIEYETTYHKEHKEARHVEHPEPCSIPEVKKQCNAYQFVPVNDKTVNTALCKAVQNHQLEPSKAADYFPESPCKASDGFSNPFVGLIMAIITGIITMMRLTKDMPKKTTGVVNYDETMMKAAPTISIDNHMDMIKRMVELEEKVNVLSMRPEMPPEMEELLNNALSRVTTLEQELASAIEARDDALAKQVELQAHIENKKKNKKKKKLFSFHW* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1801 567 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 142 316 IPR001251 -
Lan8g1801 567 Coils Coil 515 542 - -
Lan8g1801 567 CDD SEC14 143 311 IPR001251 -
Lan8g1801 567 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 13 559 - -
Lan8g1801 567 Gene3D - 130 341 IPR036865 -
Lan8g1801 567 Pfam CRAL/TRIO, N-terminal domain 94 121 IPR011074 -
Lan8g1801 567 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 13 559 - -
Lan8g1801 567 Gene3D - 40 129 - -
Lan8g1801 567 PRINTS Cellular retinaldehyde-binding protein signature 100 122 - -
Lan8g1801 567 PRINTS Cellular retinaldehyde-binding protein signature 269 288 - -
Lan8g1801 567 PRINTS Cellular retinaldehyde-binding protein signature 302 311 - -
Lan8g1801 567 SUPERFAMILY CRAL/TRIO N-terminal domain 67 138 IPR036273 -
Lan8g1801 567 SMART sec14_4 142 313 IPR001251 -
Lan8g1801 567 SMART CRAL_TRIO_N_2 97 122 IPR011074 -
Lan8g1801 567 Pfam CRAL/TRIO domain 148 310 IPR001251 -
Lan8g1801 567 SUPERFAMILY CRAL/TRIO domain 142 338 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1801 Lan-Chr8 24547799 24552637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1801 76 307 Acyl Lipid Metabolism Gene Families AT5G47730 27.642 9.96e-21 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1801 - - gmx:100792335 747.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1801 8 24547799 24552637 Lan13g0218 13 1374890 1379047 LSH