Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0218 ATGTGTGATACTATGTCCATTACTGCCACAGATATTCGACCTGTTAAAGGTCTTGAAATTGAATATACAGAGGATGAAAAGAAGACGAGGCGCAGGTCTTTAAAGAAGGTAGCATTCAGTGCATCTTCTAAGTTCAAGAGTTCCTTCACAAAGAAGGGCCGAAGGCATAACAGGGTTATGTGTATTGCTATTGAGGATGACCTTGATGCAGAAGAGTTGCAAGCTGTTGATGCTTTTCGCCAAGGTCTCATCTTAGAGGAACTCTTACCCTCAAAACATGATGATCATCATATGATGCTAAGATTCTTGAGAGCAAGAAAGTTTGACACCGAGAAATCTAAACAAATGTGGGCAGATATGCTTCAGTGGAGGAAGGAGTTTGGTGCTGATACCATCATGGAGGATTTTGAATTTGAAGAGATGGATGAAGTTCTAAAATACTATCCACAAGGGAATCATGGAGTTGATAAGGATGGACGACCTATTTACATTGAAAAATTGGGACAGGTTGACCCTAACAAGCTACTGCAAGTAACAACTATGGACCGCTATCTTAAGTACCATGTAAGAGAGTTTGAGAGGACCTTCAATGTTAAGTTACCTGCATGTTCAATTGCAGCAAAGAAGCACATTGACCAAAGCACAACTATCTTGGATGTTCAAGGAGTGGGTCTTAAAAGTATGAACAAAGCTGCAAGGGATCTTCTTCAAAGGCTTCAGAGAATTGACGGTGACAACTATCCTGAGTCCCTGAACCGTATGTTCATCATCAATGCTGGTTCTGGATTTAGGTTGTTGTGGAACACTATTAAGTCATTCCTTGATCCGAAGACCACGGCGAAAATCCATGTTCTAGGTAACAAATATGAGAGCAAGTTGTTTGAAATCATTGATGCCAGTGAACTTCCGGAGTTCTTGGGAGGTACTTGCACCTGTGCAGATAAAGGTGGTTGTATGCTTTCTGACAAGGGACCATGGAATGATCCAGATATCTTGAAGATGGTCCAAAATGGTGAGGGAAAATGTCAGAGGAAAAACTTATCCGCAATTGAAGAGAAAACAATCCTTGAAGATGAAGAGAGAACAATCCTTGAGGATGAAACAGTCACAAAGGAAGGTAATGCATATCATTTTGTCCCAGTGGTTGACAAGCCGGTCAATACTACTTCGAACAAAGCAGTACAAAATGATCAACTTGCACGTTCTAAAGCCACTGATTATTTTCCGGAGAGTCCTCGCAAGGCTTCTATTGGGTTTAGAAATCCATTTCGTGGTGGAATCATGGCGGTCATAACGGGAATTGTGAACATGCCTAAGAAAATCGCTGCAGTTAAACTGTATGGTGAGTTAGCAGTATATTATGGTGGCATTATGACAAAAGCAGCACCTACCATTTCCATTGATCATCACACGGCTATGATGAGGCGCATGGCTGAACTAGAAGAGAAGGTCAATGTCCTCAACATGAGACCAGTCATGCCACCTGAAAAGGAAGAACTACTCAATAATGCTCTAAGCAGAGTCACCACTCTGGAACAAGAGTTGGCTTCATCCAAAAAGGCACTTGATGATGCCCTTGCTAAACAAGTGGAGTTCCAAGCCTACATTGACAAGAAAAAGAAGAAGCTGGTATGTCATTCGAACTTTGACACTGATACGTTACTCGCCATGCAATATTTCTAA 1683 0.4153 MCDTMSITATDIRPVKGLEIEYTEDEKKTRRRSLKKVAFSASSKFKSSFTKKGRRHNRVMCIAIEDDLDAEELQAVDAFRQGLILEELLPSKHDDHHMMLRFLRARKFDTEKSKQMWADMLQWRKEFGADTIMEDFEFEEMDEVLKYYPQGNHGVDKDGRPIYIEKLGQVDPNKLLQVTTMDRYLKYHVREFERTFNVKLPACSIAAKKHIDQSTTILDVQGVGLKSMNKAARDLLQRLQRIDGDNYPESLNRMFIINAGSGFRLLWNTIKSFLDPKTTAKIHVLGNKYESKLFEIIDASELPEFLGGTCTCADKGGCMLSDKGPWNDPDILKMVQNGEGKCQRKNLSAIEEKTILEDEERTILEDETVTKEGNAYHFVPVVDKPVNTTSNKAVQNDQLARSKATDYFPESPRKASIGFRNPFRGGIMAVITGIVNMPKKIAAVKLYGELAVYYGGIMTKAAPTISIDHHTAMMRRMAELEEKVNVLNMRPVMPPEKEELLNNALSRVTTLEQELASSKKALDDALAKQVEFQAYIDKKKKKLVCHSNFDTDTLLAMQYF* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0218 560 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 10 543 - -
Lan13g0218 560 Pfam CRAL/TRIO domain 146 308 IPR001251 -
Lan13g0218 560 PRINTS Cellular retinaldehyde-binding protein signature 98 120 - -
Lan13g0218 560 PRINTS Cellular retinaldehyde-binding protein signature 267 286 - -
Lan13g0218 560 PRINTS Cellular retinaldehyde-binding protein signature 300 309 - -
Lan13g0218 560 Pfam CRAL/TRIO, N-terminal domain 92 119 IPR011074 -
Lan13g0218 560 SMART sec14_4 140 311 IPR001251 -
Lan13g0218 560 Gene3D - 34 127 - -
Lan13g0218 560 Coils Coil 501 528 - -
Lan13g0218 560 SMART CRAL_TRIO_N_2 95 120 IPR011074 -
Lan13g0218 560 Coils Coil 470 490 - -
Lan13g0218 560 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 140 314 IPR001251 -
Lan13g0218 560 SUPERFAMILY CRAL/TRIO domain 139 336 IPR036865 -
Lan13g0218 560 Gene3D - 128 340 IPR036865 -
Lan13g0218 560 CDD SEC14 145 309 IPR001251 -
Lan13g0218 560 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 10 543 - -
Lan13g0218 560 SUPERFAMILY CRAL/TRIO N-terminal domain 66 136 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0218 Lan-Chr13 1374890 1379047 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0218 74 305 Acyl Lipid Metabolism Gene Families AT5G47730 26.971 1.79e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0218 - - gmx:100792335 754.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1801 8 24547799 24552637 Lan13g0218 13 1374890 1379047 LSH