Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1732 ATGTTGTCTGAATTGGGTAGAAGACCGATGCTTGGGAACAAGGATGGTTCTTTTGGTGATGATTTGGAGAAGGAGTTAGGGATGTTGCTTCGCGGGCAACGTAGACAGGAAAGTGATGATTGGGAAAGAGAACTCAATATTTATAGGAGTGGATCAGCGCCTCCAACTGTGGAAGGTTCTCTTAATGCAGTTGGAGGAATGTTTGGTGGTGGTACTGAGGCTGAGGCTGAGGCTGAGGCTGAGGCTGAGGCTGTTACTGCTTCCTTATCCGAGGAAGAGCTTCGGTCTGATCCAGCTTATCTTTCATACTATTACTCCAATGTGAATTTGAATCCGAGACTTCCACCTCCTTTGTTATCAAAAGAGGATTGGAGGTTTTCTCAAAGACTTAAAGGTGGAGGAGCTTCAGTTCTTGGTGGAATCGGAGATAGGAGGAAAGCGAACATAACTGATGATAACGGTGGTAGATCGCCGTTTTTGACCCCTCCGGGTTTTAACATGAGGAAACAAGAGAGTGAGTTGGATAATGAAAAAACAGGAGGAGGATCAGCTGAGTGGGGTGGTGATGGACTGATTGGTTTCTCTGGGCTAGGGCTTAGGACCAAACAAAAGAGCCTCGCCGAAATTTTTCCGGATGACATGGGGTTTAACGCCCCTATCACAGGCCTTCCTTCTCGTCCTAGCAGTCGTAATACATTTGATGAAGCTGAGTTGGCTCATATACGCCATGGTTCCCCAACCACTGACGCTTTAAAGTCACCTGCAGCCCAAACTATTGGCCTACCAGCTTCATATTCATATGCTGCTGTACTAGGAGGATCTTCTTTGTCAAGAAGCACCACTCCTGATCCACAAATTGTTGCTAGGGCTCCCAGTCCTTGCCTCACACCTATTGGTGGCGGGAGAACTGTTGCTGCAGACAAGAGAGGCGTTGCCAGTCCGGATTTATTTCGCAGTGTTTCCTCTGGCATCAATGAGTCATCTGATCTTGTGTCTGCATTGTCGGGTCTGAACCTGTCCGGAGACAACATATTATATGGTGACAACCATTTGCCATCACAGGTTGAATCAGATGTTGATAATCACCAGAGATATCTTTTCGGTATGCAAGGTGGTCAAGATCATGGCAAGCAACATGCATATTTAAAGAAGACTGAATCAGGTCACATGCAAAACTCCGGCAAGTTTGGTGGGAGTGGGTCAGACCTCAACAACCCATCTTTCGATAGGCGAGTTGAGCTACAAAAATATAATGTTCCTTCCGGTAATTCATATTTGAAAGGATCACCTACCTCCAATTATAGTGGAGGAAGCAGTTTTCCTACTCAATACCAGCCTTTAGATGGAACAAGCTCACCATTTACTAACTATGGCTTGAATGGCTATGTGGGAAACCCGGCATTGGCATCCTTGATGACTAACCAACTTGGCTCAGGTAATATGCCACCCCTCTATGAAAATGTTGCTGCAGCATCAGCAATGGGAAGCCCTGGAATGGACTCGAGAGTTCTTGGAGGTGGTTTAGGTCTTGGATCTGATGTGCATAATCTTAGTAGAATGGGAAATCAAATTGTGGGTGGTGGTCTCCAGTCTTCTTTTGTTGATCCTATGTATCTTCCATACTTGAGGACATCCGAGTATGCAGGACAACTTGGCGCGCTTAATGACCCTTCAGCGCACAGGAACTACTTAGGTGATTCATACATGCTCGAGCTTCAGAAAGCTTATCTTGGGTCTCTGCTCTCACCTCAGAAGTCCCAATACAATGTTCCACTGGTTGGTAAATCCGGTGGCTCCAATCATCATGGTTATTATGGAAATCAGGCATATGGCGTGGGCTTATCTTACCCAGGAAGTCCAATTGCAAACTCTGCTGTGTCTAATTCTCCTGTTGGATCTGGAAGTCCGATTAGGCACAATGAACTGAATATGCGTTTTGCTACTGGAATGAGGAATTTAGCTGGGGTAATGGGACCTTGGCATGCAGATGCTGGGGCGATGGGTGAAAGCTTTGCTTCTTCTCTGTTGGAAGAGTTCAAAAACAATAAAACTAAGTGTTTTGAACTCTCTGAACTTGCTGGTCATGTTGTTGAATTCAGTGCGGATCAATATGGGAGCCGATTTATTCAACAAAAGCTTGAAACAGCAACTACAGAAGAAAAAAACATGGTTTACGAGGAAATCATGCCACATGCTCTTGCTTTGATGACTGATGTCTTTGGCAATTATGTGGTTCAGAAGTTTTTTGAGCACGGACTTTCATCCCAGAGAAGAGAAATAGCAAACAAGCTTGTAGGCCATGTTCTGAATCTTAGCCTTCAAATGTATGGTTGTCGAGTCATCCAGAAGGCCATCGAAGTTGTTGATTTGGATCAGAAGATAGAGATGGTTCAAGAGCTTGACGGTAATATCATGCGCTGTGTACGTGATCAGAATGGTAACCATGTTATTCAGAAGTGTATTGAATGTGTCCCTGAAGATGCAATCCAGTTTATTGTCACAACTTTTTTTGATCAAGTTGTGACACTTTCAACCCATCCATATGGTTGTCGGGTCATACAGAGAGTACTGGAACACTGCAGAGACGTTACAACAGAGCAGAAAGTTATGGACGAGATTTTAGGGGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACTACGTTGTTCAGCATGTACTGGAACATGGGAAACCTCATGAGCGTTCTGCTATAATAAAGGAATTAGCAGGCAAGATAGTTCAAATGAGTCAACAGAAGTTTGCCTCTAATGTTGTAGAGAAATGTTTGAGCTTTGGAGGTCCTTCTGAACGACTATTACTAGTGAATGAGATGCTTGGCTCCACAGACGAAAATGAACCTCTTCAGGCCATGATGAAAGATCAATTCGCAAATTATGTTGTACAAAAGGTGCTGGAAACCTGTGAGGACCAACAACGTGAGCTGATTCTCTCACGAATCAAGGTTCATCTGAACGCATTAAAAAAGTACACCTATGGTAAACATATCGTCGCGCGTGTGGAGAAACTTGTTGCTGCTGGAGAAAGGAGAGTTGCTGCCCAATCTCCTCAACCTGCATAG 3081 0.4453 MLSELGRRPMLGNKDGSFGDDLEKELGMLLRGQRRQESDDWERELNIYRSGSAPPTVEGSLNAVGGMFGGGTEAEAEAEAEAEAVTASLSEEELRSDPAYLSYYYSNVNLNPRLPPPLLSKEDWRFSQRLKGGGASVLGGIGDRRKANITDDNGGRSPFLTPPGFNMRKQESELDNEKTGGGSAEWGGDGLIGFSGLGLRTKQKSLAEIFPDDMGFNAPITGLPSRPSSRNTFDEAELAHIRHGSPTTDALKSPAAQTIGLPASYSYAAVLGGSSLSRSTTPDPQIVARAPSPCLTPIGGGRTVAADKRGVASPDLFRSVSSGINESSDLVSALSGLNLSGDNILYGDNHLPSQVESDVDNHQRYLFGMQGGQDHGKQHAYLKKTESGHMQNSGKFGGSGSDLNNPSFDRRVELQKYNVPSGNSYLKGSPTSNYSGGSSFPTQYQPLDGTSSPFTNYGLNGYVGNPALASLMTNQLGSGNMPPLYENVAAASAMGSPGMDSRVLGGGLGLGSDVHNLSRMGNQIVGGGLQSSFVDPMYLPYLRTSEYAGQLGALNDPSAHRNYLGDSYMLELQKAYLGSLLSPQKSQYNVPLVGKSGGSNHHGYYGNQAYGVGLSYPGSPIANSAVSNSPVGSGSPIRHNELNMRFATGMRNLAGVMGPWHADAGAMGESFASSLLEEFKNNKTKCFELSELAGHVVEFSADQYGSRFIQQKLETATTEEKNMVYEEIMPHALALMTDVFGNYVVQKFFEHGLSSQRREIANKLVGHVLNLSLQMYGCRVIQKAIEVVDLDQKIEMVQELDGNIMRCVRDQNGNHVIQKCIECVPEDAIQFIVTTFFDQVVTLSTHPYGCRVIQRVLEHCRDVTTEQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSAIIKELAGKIVQMSQQKFASNVVEKCLSFGGPSERLLLVNEMLGSTDENEPLQAMMKDQFANYVVQKVLETCEDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRVAAQSPQPA* 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1732 1026 ProSiteProfiles Pumilio RNA-binding repeat profile. 944 985 IPR001313 GO:0003723
Lan8g1732 1026 ProSiteProfiles Pumilio RNA-binding repeat profile. 727 762 IPR001313 GO:0003723
Lan8g1732 1026 MobiDBLite consensus disorder prediction 1 20 - -
Lan8g1732 1026 CDD Pumilio 687 1007 IPR033712 GO:0003723
Lan8g1732 1026 SMART pum_5 727 762 IPR001313 GO:0003723
Lan8g1732 1026 SMART pum_5 908 943 IPR001313 GO:0003723
Lan8g1732 1026 SMART pum_5 799 834 IPR001313 GO:0003723
Lan8g1732 1026 SMART pum_5 691 726 IPR001313 GO:0003723
Lan8g1732 1026 SMART pum_5 950 985 IPR001313 GO:0003723
Lan8g1732 1026 SMART pum_5 835 870 IPR001313 GO:0003723
Lan8g1732 1026 SMART pum_5 872 907 IPR001313 GO:0003723
Lan8g1732 1026 SMART pum_5 763 798 IPR001313 GO:0003723
Lan8g1732 1026 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 671 1011 IPR033133 GO:0003723
Lan8g1732 1026 SUPERFAMILY ARM repeat 674 1008 IPR016024 -
Lan8g1732 1026 ProSiteProfiles Pumilio RNA-binding repeat profile. 908 943 IPR001313 GO:0003723
Lan8g1732 1026 ProSiteProfiles Pumilio RNA-binding repeat profile. 872 907 IPR001313 GO:0003723
Lan8g1732 1026 Pfam Nucleic acid binding protein NABP 289 690 IPR012940 -
Lan8g1732 1026 PANTHER PUMILIO HOMOLOG 1-RELATED 36 1019 - -
Lan8g1732 1026 Coils Coil 75 95 - -
Lan8g1732 1026 Pfam Pumilio-family RNA binding repeat 958 987 IPR001313 GO:0003723
Lan8g1732 1026 Pfam Pumilio-family RNA binding repeat 731 764 IPR001313 GO:0003723
Lan8g1732 1026 Pfam Pumilio-family RNA binding repeat 767 800 IPR001313 GO:0003723
Lan8g1732 1026 Pfam Pumilio-family RNA binding repeat 913 946 IPR001313 GO:0003723
Lan8g1732 1026 Pfam Pumilio-family RNA binding repeat 810 833 IPR001313 GO:0003723
Lan8g1732 1026 Pfam Pumilio-family RNA binding repeat 878 909 IPR001313 GO:0003723
Lan8g1732 1026 Pfam Pumilio-family RNA binding repeat 839 874 IPR001313 GO:0003723
Lan8g1732 1026 Pfam Pumilio-family RNA binding repeat 695 729 IPR001313 GO:0003723
Lan8g1732 1026 ProSiteProfiles Pumilio RNA-binding repeat profile. 691 726 IPR001313 GO:0003723
Lan8g1732 1026 ProSiteProfiles Pumilio RNA-binding repeat profile. 799 834 IPR001313 GO:0003723
Lan8g1732 1026 ProSiteProfiles Pumilio RNA-binding repeat profile. 835 871 IPR001313 GO:0003723
Lan8g1732 1026 ProSiteProfiles Pumilio RNA-binding repeat profile. 763 798 IPR001313 GO:0003723
Lan8g1732 1026 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 36 1019 - -
Lan8g1732 1026 Gene3D - 671 1017 IPR011989 -
Lan8g1732 1026 MobiDBLite consensus disorder prediction 388 407 - -
Lan8g1732 1026 MobiDBLite consensus disorder prediction 141 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1732 Lan-Chr8 24088389 24094295 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1732 K17943 - gmx:100803806 1630.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1732 8 24088389 24094295 Lan13g0313 13 2051293 2068099 LSH