Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0313 ATGTTGTCTGAATTGGAAAGAAGACCCATGATTGGGAACAACGATGGTTATTTTGGTGGTGAATTAGAGAAGGAGATAGGTACGTTGCTTCGCGATCAACGTGGACAAGAAAGTGATGATCTTGAAAGAGAACTCAATATATTTAGGAGTGGATCAGCACCTCCAACTGTGGAAGGTTCTTTGAATGCAGTTGGAGGATTGTTTAATAGTGGTGCTGATGCTGTTACTGCTTCCTTATCTGAGGAAGAACTTAGGTCTGATCCAGCTTATCATTCATACTATTACTCCAATGTGAATTTGAATCCTAGGCTTCCACCTCCTTTGTTATCTAAAGAGGATTGGAGGTTTGCTCAAAGGCTTAAAGGTGGAGGAGCTTCGGTTCTGGGTGGAATTGGAGATAGGAGGAAAGTGAACAGAACTGATGATAACATTGGTGGTAGATCGACGTATTCGACTCCGCCCGGTTTTAACATGAGGAAACAAGAGAGTCAGAGTGAAGCGGATAATGAAAAAGCAGGAGGCTCAGCTGAGTGGAGTGGTGATGGACTGATTGGTTTGCCTGGCCTAGGGCTTAGAACCAAACAAAAGAGCATTGCTGAAAATTTTCAGGATGACATGGGGTGTAACACCTCCGTCACAGGCTTTCCTTCTCGTCCTGCCAGTCGTAACGCATTTGATGAAAATGCTGATGTCATTAGTTTTGTTGAAGCAGAGTTAGGCCACATAGGCCATGGTTCCCCAACCACAGATGCTATTAAATCATCTGTAGCTGAAAACATTAGCCTGTCAGCTTCATATTCCTATGCTGCTGCACTAGGAGGATCTTCTTTGTCAAGAAGCACGACTCCTGATCCACAAATTGTTGCTAGGGCTCCCAGTCCCTGCCTCACACCAATTGGTGGTGGGAGAACTGTTGTTGCGGACAAGAGAGGTGTTGCCAGTCCAGATTTATTTAATGGTGTTTCATCTGGCATCAATGAGCCATCCGATCTTGTGGCTGCATTGTCGGGTATGAATCTGTCAAGAGAAGATACATTAGATGGTCAAAACCATTTGCCATCACAGGTCCAATCAGATGTTGGTAATCATACGAGATATCTTTTCGGTATGCAAGGGAGTCAGGATCGTGGCAAGCAACATGCATATTTAAAGAAGTCTGAATCTGGTAACGTGCAAAATTCAAACAAGACCGGTGGGAGTCGGCCAGACCTCAATAACCCATTTTTGGATAGGCGTGTTGAGCAACAAAAATCTGATGCTCCTTCCCATAATTCCTATTTCAAAGGATCACCTTCCTCCAATTTTAATGGTGGAAGCAGTTTTCCTGCTCAGTACCTGCCTTCAGATGGAACAAATTCACCATTTACTAACTATGGCTTGAGTGGGTATGCTGGAAATCCAGCATTGGCATCCTGGATGACTAACCAACTTGGCACCGGTAATATGCCACCCCTATATGAAAATGTTGTTGCAGCATCAGCTATGGCCAACCCTGGAATGGACCCGAGAATTCTTGGTAAAATGGGAAATCAAATTGCGGCCAGTGGTCTTCAGTCTCCTTTTGTTGATCCCATGTATCTTCACTACTTGAGGACATGTCAGTACACCGGACAACTTGGTGCTCTTAATGATCTGTCCTCTGTGGACAGGAACTACTTAGGTAATGCATATATGCTTGAGCTTCAGAAAGCTCATCTTGGGTCTCTCCCCTCACCTCGGAAGTCTCAATACAATGTTCCACTGGGTGGTAAATCAGGCGGCTCCAATCATTATGGGTATTATGGGAATCCGGCATATGGTGTTGGGTTGTCTTACCCAGGAAGTCCAATGGCAAACTCTGCGGTATCTACTTCTCCAGGTGGATCTGGAAAGAGGAATTTAGCTGGGGTAATGGGACATTGGCATGCAGATGCTGGGACCATGGATGAAAGCTTTGCTTCTTCTCTTTTGGGAGAGTTCAAAAACAACAAAACCAAGTGTCCTGATCTCTCTGAAATTGCTGGTCATGTTGTTGAATTCAGTGCAGATCAATATGGAAGCCGATTTATTCAACAAAAGCTTGAAACAGCAACCACAGATGAAAAAAACATGGTTTATCAGGAAATCATGCCATATGCTCTTTCTTTGATGACTGACGTGTTTGGTAATTACGTGGTTCAAAAGTTTTTTGAGCATGGACTTCCATCCCAGAGAAGAGAATTAGCCAAAGAGCTTGTAGGCCATGTTCTGGGTCTTAGCCTTCAAATGTATGGTTGCCGGGTGATCCAGAAGGCCATCGAAGTTGTTGATTTGGATCAGAAGATAGAGATGGTTCAAGAGCTTGAAGGTAATATCATCCACTGTGTACGTGATCAGAATGGTAACCATGTCATTCAGAAGTGTATTGAATGCGTCCCTGAAGAAGCAATCCAGTTTATTGTCTCGACTTTTTTTGATCAAGTTGTGACACTTTCAACCCATCCATATGGTTGTCGGGTGATACAGAGAGTACTGGAACACTGCAAAGATCCTACAACACAGCAGAAAGTTATGAATGAGGTTTTAGGAGCTGTTAGCATGTTAGCTCAGGATCAGTATGGCAATTACGTTGTTCAGCATGTACTCGAACACGGGAAACCTCATGAGCGTTCGGCTATAATAAAGGAATTAGCAGGAAAGATAGTTCAAATGAGTCAACAAAAGTTTGCCTCTAATGTTGTAGAGAAATGTTTGAGCTTTGGAGGTCCTTCTGAACGACTACTACTAGTGAATGAGATGCTTGGGTCCACAGATCAAAATGAACCTCTTCAGGCCATGATGAAAGATCAATTCGCGAATTATGTCGTACAAAAGATGCTGGAAACATGTGAGGACCAGCAACGCGATCTGATACTCTCACGAATCAAGGTTCATCTGAATGCATTGAAAAAGTACACTTATGGTAAACATATTTTCACACGTGTAGAGAAACTTGTTGCTGCTGGAGGAAGGAAAGTTGAGAGAAAGAGATTGAAGGGAAATTGGGAGGATGGAGTTTAG 3018 0.4341 MLSELERRPMIGNNDGYFGGELEKEIGTLLRDQRGQESDDLERELNIFRSGSAPPTVEGSLNAVGGLFNSGADAVTASLSEEELRSDPAYHSYYYSNVNLNPRLPPPLLSKEDWRFAQRLKGGGASVLGGIGDRRKVNRTDDNIGGRSTYSTPPGFNMRKQESQSEADNEKAGGSAEWSGDGLIGLPGLGLRTKQKSIAENFQDDMGCNTSVTGFPSRPASRNAFDENADVISFVEAELGHIGHGSPTTDAIKSSVAENISLSASYSYAAALGGSSLSRSTTPDPQIVARAPSPCLTPIGGGRTVVADKRGVASPDLFNGVSSGINEPSDLVAALSGMNLSREDTLDGQNHLPSQVQSDVGNHTRYLFGMQGSQDRGKQHAYLKKSESGNVQNSNKTGGSRPDLNNPFLDRRVEQQKSDAPSHNSYFKGSPSSNFNGGSSFPAQYLPSDGTNSPFTNYGLSGYAGNPALASWMTNQLGTGNMPPLYENVVAASAMANPGMDPRILGKMGNQIAASGLQSPFVDPMYLHYLRTCQYTGQLGALNDLSSVDRNYLGNAYMLELQKAHLGSLPSPRKSQYNVPLGGKSGGSNHYGYYGNPAYGVGLSYPGSPMANSAVSTSPGGSGKRNLAGVMGHWHADAGTMDESFASSLLGEFKNNKTKCPDLSEIAGHVVEFSADQYGSRFIQQKLETATTDEKNMVYQEIMPYALSLMTDVFGNYVVQKFFEHGLPSQRRELAKELVGHVLGLSLQMYGCRVIQKAIEVVDLDQKIEMVQELEGNIIHCVRDQNGNHVIQKCIECVPEEAIQFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCKDPTTQQKVMNEVLGAVSMLAQDQYGNYVVQHVLEHGKPHERSAIIKELAGKIVQMSQQKFASNVVEKCLSFGGPSERLLLVNEMLGSTDQNEPLQAMMKDQFANYVVQKMLETCEDQQRDLILSRIKVHLNALKKYTYGKHIFTRVEKLVAAGGRKVERKRLKGNWEDGV* 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0313 1005 ProSiteProfiles Pumilio RNA-binding repeat profile. 846 881 IPR001313 GO:0003723
Lan13g0313 1005 ProSiteProfiles Pumilio RNA-binding repeat profile. 665 700 IPR001313 GO:0003723
Lan13g0313 1005 Pfam Nucleic acid binding protein NABP 290 664 IPR012940 -
Lan13g0313 1005 ProSiteProfiles Pumilio RNA-binding repeat profile. 809 845 IPR001313 GO:0003723
Lan13g0313 1005 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 36 993 - -
Lan13g0313 1005 SMART pum_5 773 808 IPR001313 GO:0003723
Lan13g0313 1005 SMART pum_5 737 772 IPR001313 GO:0003723
Lan13g0313 1005 SMART pum_5 809 845 IPR001313 GO:0003723
Lan13g0313 1005 SMART pum_5 882 917 IPR001313 GO:0003723
Lan13g0313 1005 SMART pum_5 701 736 IPR001313 GO:0003723
Lan13g0313 1005 SMART pum_5 924 959 IPR001313 GO:0003723
Lan13g0313 1005 SMART pum_5 665 700 IPR001313 GO:0003723
Lan13g0313 1005 SMART pum_5 846 881 IPR001313 GO:0003723
Lan13g0313 1005 PANTHER PUMILIO HOMOLOG 1-RELATED 36 993 - -
Lan13g0313 1005 SUPERFAMILY ARM repeat 648 982 IPR016024 -
Lan13g0313 1005 MobiDBLite consensus disorder prediction 419 433 - -
Lan13g0313 1005 Pfam Pumilio-family RNA binding repeat 813 848 IPR001313 GO:0003723
Lan13g0313 1005 Pfam Pumilio-family RNA binding repeat 932 961 IPR001313 GO:0003723
Lan13g0313 1005 Pfam Pumilio-family RNA binding repeat 741 774 IPR001313 GO:0003723
Lan13g0313 1005 Pfam Pumilio-family RNA binding repeat 669 703 IPR001313 GO:0003723
Lan13g0313 1005 Pfam Pumilio-family RNA binding repeat 887 920 IPR001313 GO:0003723
Lan13g0313 1005 Pfam Pumilio-family RNA binding repeat 707 738 IPR001313 GO:0003723
Lan13g0313 1005 Pfam Pumilio-family RNA binding repeat 852 883 IPR001313 GO:0003723
Lan13g0313 1005 Pfam Pumilio-family RNA binding repeat 783 807 IPR001313 GO:0003723
Lan13g0313 1005 Gene3D - 645 990 IPR011989 -
Lan13g0313 1005 MobiDBLite consensus disorder prediction 414 433 - -
Lan13g0313 1005 ProSiteProfiles Pumilio RNA-binding repeat profile. 701 736 IPR001313 GO:0003723
Lan13g0313 1005 MobiDBLite consensus disorder prediction 373 407 - -
Lan13g0313 1005 MobiDBLite consensus disorder prediction 143 162 - -
Lan13g0313 1005 CDD Pumilio 661 981 IPR033712 GO:0003723
Lan13g0313 1005 ProSiteProfiles Pumilio RNA-binding repeat profile. 882 917 IPR001313 GO:0003723
Lan13g0313 1005 ProSiteProfiles Pumilio RNA-binding repeat profile. 737 772 IPR001313 GO:0003723
Lan13g0313 1005 MobiDBLite consensus disorder prediction 131 180 - -
Lan13g0313 1005 ProSiteProfiles Pumilio RNA-binding repeat profile. 773 808 IPR001313 GO:0003723
Lan13g0313 1005 MobiDBLite consensus disorder prediction 279 302 - -
Lan13g0313 1005 ProSiteProfiles Pumilio RNA-binding repeat profile. 918 959 IPR001313 GO:0003723
Lan13g0313 1005 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 645 985 IPR033133 GO:0003723
Lan13g0313 1005 MobiDBLite consensus disorder prediction 385 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0313 Lan-Chr13 2051293 2068099 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0313 K17943 - gmx:100803806 1481.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1732 8 24088389 24094295 Lan13g0313 13 2051293 2068099 LSH